Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2523g00002 ATGACAAGATTGGGGAATGGAACTGGAAAATTACTGCCATTTGTGGGAATGATGGTGGCTATGCTAACTCAAAGTGGCAGCATGGTGGTAATCAAAGTTGCCATGATTGATGATATCAACAAATATGTCATGGTTGTCTACTCTTTTGCACTCTCCACAATCTTGCTTCTTCCCTTTGCCTTGTTTCTCCACAGGTCAGAACGTCCTCCTCTCACGTTCTCTGCACTCTGCAGCTTCTTTCTGCTTGCATTCTTTGGGAGTTCAGGAACTATAATGGCTTATGTTGGAATTGAACTGAGCTCGCCGACACTTGCATCAGCCCTTCTTAACCTCGTTCCAGCTTTCACTTTTATACTTGCTCTCATTTTCAGGATGGAAGAAGTACGGTGGAGGAACTCAAGCAGCCAAGCTAAAGTGTTAGGAACAGTAGCATCAATTGCAGGAGCATTTGTTGTGATACTGTACAAGGGTCCTCTCATCTTTAAGACGCATTCGACTAACTTTTCTAACCAAATCCTTCAATTTTCAGCACAGCTAAATTGGATCTTAGGAGGGATATTCTGCATTGCAGATTCACTTTTTACTTCCATGTGGTACATATATCAGGCTTCGGTAGCAAAGAAATACCCTGCTGTAACAGTGATTGTATTCTTCCAACTCTTATCTTCAACCGTGCAGTGTGGAGTATTTGCCTTAATTGCTGTGAGGGATCCGACTGAATGGAAGCTCAACTTGGATATAGGGCTGATTGGCGTTCTATATCAGGCAATAGTTGCAACGATGATACGTTACCTACTATGCACATGGTGCGTCCTTAAAGCAGGTCCTCTGTTTTGTTCTATGTTCAAACCTGTGGCAATCATTTTCACCACTTTCATGGGTGCAATCTTTCTTGGAGATGATTTCAGTCTTGGAAGTTTGATTGGTGCGGTTATAATCGTGGTTGGATTTTATGCTGTATTGTGGGGGAAATCGAAAGAGGAGAATGAGATTGCAAAAGGGGTTGAGAACTTGGAGTCACCATGCCATAATGTTCCTTTGTTGCAAGATAGGAACAGGTTCAAGCTGTGA 1071 0.4258 MTRLGNGTGKLLPFVGMMVAMLTQSGSMVVIKVAMIDDINKYVMVVYSFALSTILLLPFALFLHRSERPPLTFSALCSFFLLAFFGSSGTIMAYVGIELSSPTLASALLNLVPAFTFILALIFRMEEVRWRNSSSQAKVLGTVASIAGAFVVILYKGPLIFKTHSTNFSNQILQFSAQLNWILGGIFCIADSLFTSMWYIYQASVAKKYPAVTVIVFFQLLSSTVQCGVFALIAVRDPTEWKLNLDIGLIGVLYQAIVATMIRYLLCTWCVLKAGPLFCSMFKPVAIIFTTFMGAIFLGDDFSLGSLIGAVIIVVGFYAVLWGKSKEENEIAKGVENLESPCHNVPLLQDRNRFKL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2523g00002 356 PANTHER WAT1-RELATED PROTEIN 13 332 IPR030184 GO:0016020|GO:0022857
Vium2523g00002 356 Pfam EamA-like transporter family 184 321 IPR000620 GO:0016020
Vium2523g00002 356 Pfam EamA-like transporter family 16 153 IPR000620 GO:0016020
Vium2523g00002 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 326 - -
Vium2523g00002 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2523g00002 Vium-Chr2523 41781 44566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2523g00002 8 350 Nodulin-like Gene Family AT5G40240 39.429 6.46e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2523g00002 - - gmx:100792109 554.673