Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2523g00001 ATGACAAGATTGGGGAATGGAACTGGAAAATTACTGCCATTTGTGGGAATGATGGTGGCTATGCTAACTCAAAGTGGCAGCATGGTGGTAATCAAAGTTGCCATGATTGATGATATCAACAAATATGTCATGGTTGTCTACTCTTTTGCACTCTCCACAATCTTGCTTCTTCCCTTTGCCTTGTTTCTCCACAGGTCAGAACGTCCTCCTCTCACGTTCTCTGCACTCTGCAGCTTCTTTCTGCTTGCATTCTTTGGGAGTTCAGGAACTATAATGGCTTATGTTGGAATTGAACTGAGCTCGCCGACACTTGCATCAGCCCTTCTTAACCTCGTTCCAGCTTTCACTTTTATACTTGCTCTCATTTTCAGGATGGAAGAAGTACGGTGGAGGAACTCAAGCAGCCAAGCTAAAGTGTTAGGAACAGTAGCATCAATTGCAGGAGCATTTGTTGTGATACTGTACAAGGGTCCTCTCATCTTTAAGACGCATTCGACTAACTTTTCTAACCAAATCCTTCAATTTTCAGCACAGCTAAATTGGATCTTAGGAGGGATATTCTGCATTGCAGATTCACTTTTTACTTCCATGTGGTACATATATCAGTGTGGAGTATTTGCCTTAATTGCTGTGAGGGATCCGACTGAATGGAAGCTCAACTTGGATATAGGGCTGATTGGCGTTCTATATCAGGCAATAGTTGCAACGATGATACGTTACCTACTATGCACATGGTGCGTCCTTAAAGCAGGTCCTCTGTTTTGTTCTATGTTCAAACCTGTGGCAATCATTTTCACCACTTTCATGGGTGCAATCTTTCTTGGAGATGATTTCAGTCTTGGAAGTTTGATTGGTGCGGTTATAATCGTGGTTGGATTTTATGCTGTATTGTGGGGGAAATCGAAAGAGGAGAATGAGATTGCAAAAGGGGTTGAGAACTTGGAGTCACCATGCCATAATGTTCCTTTGTTGCAAGATAGGAACAGGTTCAAGCTGTGA 999 0.4254 MTRLGNGTGKLLPFVGMMVAMLTQSGSMVVIKVAMIDDINKYVMVVYSFALSTILLLPFALFLHRSERPPLTFSALCSFFLLAFFGSSGTIMAYVGIELSSPTLASALLNLVPAFTFILALIFRMEEVRWRNSSSQAKVLGTVASIAGAFVVILYKGPLIFKTHSTNFSNQILQFSAQLNWILGGIFCIADSLFTSMWYIYQCGVFALIAVRDPTEWKLNLDIGLIGVLYQAIVATMIRYLLCTWCVLKAGPLFCSMFKPVAIIFTTFMGAIFLGDDFSLGSLIGAVIIVVGFYAVLWGKSKEENEIAKGVENLESPCHNVPLLQDRNRFKL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2523g00001 332 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 302 - -
Vium2523g00001 332 Pfam EamA-like transporter family 16 153 IPR000620 GO:0016020
Vium2523g00001 332 PANTHER WAT1-RELATED PROTEIN 13 304 IPR030184 GO:0016020|GO:0022857
Vium2523g00001 332 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2523g00001 Vium-Chr2523 41781 44567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2523g00001 8 326 Nodulin-like Gene Family AT5G40240 38.000 1.81e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2523g00001 - - gmx:100792109 504.597