Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium251g00010 ATGGGTCTCTGCACTTCCAAACCCACTTTCTCCTCTACCCAATCAGCCACTCACTCCCCCACTCTACATTCTCAAGATGTTGCCGTCGCAGTCACTCACAGTCACAGCCCCGAACCTCACTTGCGCAGCACCGATGGCGAGAGCCAAAAACCTAAGGAGCTCGAGAACGGTAAGAGATCTCCCTTCTTTCCATTCTACAGTCCGAGTCCGGGCCGCTACGTGTTACCCGTCTCGCCCCGCCGCTTCTTCAAGCGATCGTTTCTGTCGCCCTCGCCGGCAAAGCACATAAGGGCGGCTCTGGCGCGGCGGCACGGGTCGGTGAAACCCAACGAGGCTCCCATACCTGAGGAGGAGGGGTTCTCTGGACTGAACAAGACTTTTGGATTCTCCAAACATTTCGGAAATAAATATGAAGTTGGAGATGAGGTTGGGAGAGGGCATTTTGGATACACTTGTGTTGCTAAGGTGAAGAAAGGAGAGGTGAAGGGGCAACAAGTGGCCATTAAAGTCATTCCAAAAGCCAAGATGACCACTGCAATTGCTATTGAAGATGTGAGAAGGGAGGTAAAAATTTTGAGAGCTTTGACTAGGCACAAGAATCTAGTACAATTCTATGATGCATATGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGAGAGCTGTTAGACAGAATATTGTCAAGAGGTGGGAAGTACACAGAGGAAGATGCAAAAGTTGTCCTTAGACAAATACTGGATGTGGTTGCCTTTTGCCATCTTCAGGGTGTCGTGCACCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAGGACGAGAACTCAATCCTGAAGACCATAGACTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGACTTAATGATATTGTTGGCAGTGCATACTATGTGGCACCCGAAGTTCTACATAGAGCTTACAGTACAGAAGCTGATGTATGGAGTATTGGAGTGATTGCATATATTTTATTATGTGGCAGTCGTCCCTTTTGGGCCCGGACCGAGTCTGGTATCTTCCATGCCGTGTTAAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAACAAATTTTGTTATGCGATTACTAAATAAAGATCCACGGAAAAGAATGTCTGCAGCACAGGCACTATGTCATCCATGGATTAAAAACAAGGATGTGAAAGTACCTCTGGATATTCTAATATTCAAGCTCATGAAGGCATACATGCGTTCTTCATCTCTACGGAAAGCGGCTTTAAGGGCTCTGTCCAAGACATTAACTGTGGATGAGCTATTTTACTTGAGGGAGCAGTTTTCACTTTTAAATCCAAGCAAAAATGGCTCTATTAGCTTGGAAAATATCACAGCGGTCTTGATGCTGAGTGCAACAGATGCTATGAACGAGTCACGCGTACCTGACTTTCTGATATCACTTAATGCATTACAATTTAGAAGGATGGATTTTGATGAGTTCTGTGCGGCTGCGCTTAGTGTTCATCAACTTGAAACACATGACCAGTGGGAGCAACGCGCACGTAATGCTTACGAACTCTTTGAAAAGGACGGAAACAAGGCCTTAGTCATTGACGAACTAGCTTCGGTGCTTGGGCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTCCATGATTGGATTCGGCACACTGATGGAAAATTAAGTTTCATCGGGTTTGTCAAACTGTTGCATGGTCCATCTAGAAGTCTTGCAAAAGCTCAATAG 1770 0.4548 MGLCTSKPTFSSTQSATHSPTLHSQDVAVAVTHSHSPEPHLRSTDGESQKPKELENGKRSPFFPFYSPSPGRYVLPVSPRRFFKRSFLSPSPAKHIRAALARRHGSVKPNEAPIPEEEGFSGLNKTFGFSKHFGNKYEVGDEVGRGHFGYTCVAKVKKGEVKGQQVAIKVIPKAKMTTAIAIEDVRREVKILRALTRHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKVVLRQILDVVAFCHLQGVVHRDLKPENFLFTSKDENSILKTIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFHAVLKADPSFDEPPWPSLSDEATNFVMRLLNKDPRKRMSAAQALCHPWIKNKDVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTVDELFYLREQFSLLNPSKNGSISLENITAVLMLSATDAMNESRVPDFLISLNALQFRRMDFDEFCAAALSVHQLETHDQWEQRARNAYELFEKDGNKALVIDELASVLGLGPSVPVHAVLHDWIRHTDGKLSFIGFVKLLHGPSRSLAKAQ 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium251g00010 589 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Vium251g00010 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Vium251g00010 589 Gene3D Transferase(Phosphotransferase) domain 1 226 417 - -
Vium251g00010 589 CDD STKc_CAMK 136 398 - -
Vium251g00010 589 MobiDBLite consensus disorder prediction 1 63 - -
Vium251g00010 589 FunFam Calcium-dependent protein kinase SK5 309 404 - -
Vium251g00010 589 FunFam CDPK-related kinase 3 129 301 - -
Vium251g00010 589 ProSiteProfiles Protein kinase domain profile. 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium251g00010 589 MobiDBLite consensus disorder prediction 1 31 - -
Vium251g00010 589 SMART serkin_6 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium251g00010 589 Gene3D - 423 577 - -
Vium251g00010 589 Pfam Protein kinase domain 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium251g00010 589 FunFam CDPK-related kinase 1 130 225 - -
Vium251g00010 589 SUPERFAMILY EF-hand 426 580 IPR011992 -
Vium251g00010 589 MobiDBLite consensus disorder prediction 38 57 - -
Vium251g00010 589 FunFam CDPK-related kinase 1 434 507 - -
Vium251g00010 589 Gene3D Phosphorylase Kinase; domain 1 130 225 - -
Vium251g00010 589 PANTHER SERINE/THREONINE-PROTEIN KINASE 123 563 - -
Vium251g00010 589 SUPERFAMILY Protein kinase-like (PK-like) 134 444 IPR011009 -
Vium251g00010 589 Gene3D - 418 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium251g00010 Vium-Chr251 65290 70414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium251g00010 1 589 EF-hand Containing Proteins AT3G50530 69.579 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium251g00010 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium251g00010 K13412 - gmx:100794177 1008.82