Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium251g00006 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTCAGACGAAAATGCACGCAGGAGTGCGTGTTCGCACCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGGGCCAGCAACGTGGCCAAGCTTCTCAATGAACTCAGCGCCTCGCAGCGAGACGACGCCGTAAAGTCCCTCGCTTACGAGGCCGAGGCTCGTCTCAGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTACAACACAGGCTCAGGCAGATCCAGGTGGAACTCAACAATGCAAAGAAGGAACTCGCAACATACATCGGTCCCCAAGCTTTTCAAGGCTTACCAGCCCCCATTCTCCAGCAGCACCCAAACAATCCTTTTTCCGGTTCCCTGTATGGGAGTATGGCGGGGGTGACGGCAGCCACTCACGGTGGGCAGCTGATGATTCGCGACGGCCAGTCGCCGCAGCAGCATCAGATCTTGGAGGCCCAGCAGTTGGCTGCGGCTGTGGCGGCGAGGGAGCAGCAGGAGATGTTCAGGGGTTACGAGCATCAACAGCAGCAGGAGTTTCTTAGGTTCAGTGGTGGGTTCGATGTGGGTTCTGCTTCTTCTGCTGGTGGGTTCAGCCAGATATCCCCAGCTGCTGCTTCCGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGTTCCTTCGATAACCCTTATCACATGCAGCAGCCACAGCAAGGAGAGCCTCATCCTCACAACATTCCTTTCGAGGCTCAGCTTCTGCTCCCTCCCCAGCAGAAGCAATCGCCGCAACAAAGCCAGCAGTCCCAACTGCCCCTTCACCAGCCACAGTCTGAAAGCGAGGAGTGTAGGAGTCTTGGTCCATCCTGTTGA 897 0.573 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSASQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELNNAKKELATYIGPQAFQGLPAPILQQHPNNPFSGSLYGSMAGVTAATHGGQLMIRDGQSPQQHQILEAQQLAAAVAAREQQEMFRGYEHQQQQEFLRFSGGFDVGSASSAGGFSQISPAAASADQLSPSLALGSFDNPYHMQQPQQGEPHPHNIPFEAQLLLPPQQKQSPQQSQQSQLPLHQPQSESEECRSLGPSC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium251g00006 298 Coils Coil 87 107 - -
Vium251g00006 298 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Vium251g00006 298 MobiDBLite consensus disorder prediction 232 298 - -
Vium251g00006 298 MobiDBLite consensus disorder prediction 232 250 - -
Vium251g00006 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 258 - -
Vium251g00006 298 MobiDBLite consensus disorder prediction 263 298 - -
Vium251g00006 298 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium251g00006 Vium-Chr251 22520 26236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium251g00006 3 292 AS2 family AT5G66870 51.402 1.18e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium251g00006 LOB 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium251g00006 - - gmx:102664012 465.692