Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium251g00001 ATGAATCTCTATACTCTTCTTCTTTACTCCTTCCTTCGTTATCATCTCAAATCAGGGTATGGTATGGTAGTTTGTGATTTGTGGGAGCATACTCTCGCTCACAGAAAATCACCCAATTCCACTCAACAACATTCCAGCGCTTTCATGGAGCTCAGCTTGGACTTGAGTTTGGGCTTTGTTCCCAAACCCATTTCCCTCTTTTTTGCCGATGTTTCTGGCAACAGAGACAAGACCGACAAAGTTGCCACGCTCGACGGCTTCGTGCAGAGGTTGGAGGACGAATTGAGGAAAGTTGAGGCCTTCAAACGCGAGCTTCCTCTCTGTATGCTCCTCCTAAACGATGCTATCGCCAGAATGAAGGAGGAAAAAGTAAAGTGTTCAGTACTGCAAGATCCGCCTACCAATGAACAGTTTGTGCCACCGAAAACCAATTCTGGGGGAAGCGAAAATGAAAAATGTGAGAAGAAGAATTGGATGAGTTCAGCTCAGCTTTGGAGCACTCAGAAAATCAAATCGACGAATGAGGATGGTGACAGGTCTGTGCCACAGAATCCAATTAATGGGAATTGGTGTGCCCCGAGGAAGGAGGGTTCACAAATTCCGAGCTTTAGTTTGATGGGTCACGCATCTGAACTGAGTCATAGCAATTCCAAGAGTGTATGTGGAGATACTAGTTCTGGCTCTTCTTTGCTTCGTGTTGAGGTACAGAGCCAGCCCCAACCGCCGCAACATATGCAGCAGAATTCAAGGAAACAGCGGCGGTGCTGGTCACCGGAGCTGCACCGGCGTTTTGTGGATGCTCTTCAACAACTTGGTGGAGCACAAGTGGCCACCCCTAAACAGATTAGAGAACTGATGCAGGTGGATAGCCTGACAAATGATGAAGTGAAAAGTCATTTGCAAAAATACAGGCTTCATGTTAGGAGATTCCCAGTTTCATCAGTTGGGCAGGCTGATAATGGGTCATGGATGGGACAAGATGAATGTGGGGATAAATCAAAGGGAAACTTGTCACAGTCTGGTTCTCCTCAAGGTCCTCTGACACCTCTCCTGCTAGGAGGAGGAGGGTCTGCTAAGGGTATCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAATTGGAAAGGAGGGCTGCACCAGCACCTTGAAGCTGATAACCAGAGCCTCTAA 1191 0.4761 MNLYTLLLYSFLRYHLKSGYGMVVCDLWEHTLAHRKSPNSTQQHSSAFMELSLDLSLGFVPKPISLFFADVSGNRDKTDKVATLDGFVQRLEDELRKVEAFKRELPLCMLLLNDAIARMKEEKVKCSVLQDPPTNEQFVPPKTNSGGSENEKCEKKNWMSSAQLWSTQKIKSTNEDGDRSVPQNPINGNWCAPRKEGSQIPSFSLMGHASELSHSNSKSVCGDTSSGSSLLRVEVQSQPQPPQHMQQNSRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVDSLTNDEVKSHLQKYRLHVRRFPVSSVGQADNGSWMGQDECGDKSKGNLSQSGSPQGPLTPLLLGGGGSAKGISSPGRNSVDAEDEQSDCRNWKGGLHQHLEADNQSL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium251g00001 396 MobiDBLite consensus disorder prediction 131 155 - -
Vium251g00001 396 Coils Coil 84 104 - -
Vium251g00001 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 308 IPR017930 -
Vium251g00001 396 MobiDBLite consensus disorder prediction 332 346 - -
Vium251g00001 396 MobiDBLite consensus disorder prediction 170 187 - -
Vium251g00001 396 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 56 381 IPR044787 GO:0003700|GO:0006355
Vium251g00001 396 MobiDBLite consensus disorder prediction 170 194 - -
Vium251g00001 396 MobiDBLite consensus disorder prediction 235 253 - -
Vium251g00001 396 FunFam Myb family transcription factor 250 308 - -
Vium251g00001 396 Pfam Myb-like DNA-binding domain 253 304 IPR001005 -
Vium251g00001 396 NCBIfam myb-like DNA-binding domain, SHAQKYF class 251 306 IPR006447 GO:0003677
Vium251g00001 396 MobiDBLite consensus disorder prediction 315 396 - -
Vium251g00001 396 Gene3D - 250 307 - -
Vium251g00001 396 MobiDBLite consensus disorder prediction 370 386 - -
Vium251g00001 396 MobiDBLite consensus disorder prediction 235 254 - -
Vium251g00001 396 SUPERFAMILY Homeodomain-like 249 309 IPR009057 -
Vium251g00001 396 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium251g00001 Vium-Chr251 2539 4632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium251g00001 41 301 G2-like Transcription Factor Family AT4G37180 42.599 1.16e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium251g00001 Myb_DNA-binding 2.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium251g00001 - - pvu:PHAVU_002G021400g 719.153