LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2515g00065	ATGGGTCATGATCTAAAGCATTTCATAGGTAGCCCGTATATAATTCGGAACCAAACCCTAAACCTAAGGTTGGCACTGCTTCTCAATTGCAGGGTTTTCGAAGATTTAAGAACCAGGGTCCTTCCCCTTTCGCGACTCATGGCTCCCAAAGCTGATAGTTCAAAGAAGGCCGATCCTAAGGCACAAGCCTTGAAAACTGCTAAAGCAGTTAAGTCAGGTGCTACATTTAAGAAGAAGGCCAAAAAGATCCGAACTTCTGTTACCTTCCATCGGCCGAAGACTTTGAAAAAGGATAGGAACCCCAAATACCCACGCATCAGTGCTCCACCCAGGAATAAGCTCGATCACTATCAGATACTGAAGTATCCTCTGACAACTGAGTCCGCAATGAAGAAGATTGAAGACAACAACACTTTGGTATTCATTGTTGACCTGCGGGCTGACAAGAAGAAGATCAAGGACGCAGTGAAGAAGATGTATGATATTCAGGCAAAGAAAGTTAACACCTTGATCAGGCCTGATGGGACTAAGAAGGCTTATGTCAGATTGACACCTGACTATGATGCCCTGGACGTGGCCAATAAGATTGGAATTATCTAA	600	0.4417	MGHDLKHFIGSPYIIRNQTLNLRLALLLNCRVFEDLRTRVLPLSRLMAPKADSSKKADPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	199

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2515g00065	199	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	116	192	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Vium2515g00065	199	Hamap	50S ribosomal protein L23 [rplW].	119	199	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium2515g00065	199	ProSitePatterns	Ribosomal protein L23 signature.	177	192	IPR001014	GO:0019843
	Vium2515g00065	199	Gene3D	-	80	199	IPR012677	-
	Vium2515g00065	199	NCBIfam	50S ribosomal protein L23	123	199	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Vium2515g00065	199	PANTHER	60S RIBOSOMAL PROTEIN L23A	52	199	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium2515g00065	199	Pfam	Ribosomal protein L23	119	181	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium2515g00065	199	FunFam	60S ribosomal protein L23a	79	199	-	-
	Vium2515g00065	199	Pfam	Ribosomal protein L23, N-terminal domain	60	109	IPR005633	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2515g00065	Vium-Chr2515	427621	429151	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2515g00065	47	199	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	87.662	3.17e-67	201

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2515g00065	K02893		-	qsa:O6P43_031159	272.322