Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2515g00033 ATGCAGACATTTGCACTCACTGAACCATTCATTTATCTTCATTCCTTCAATCAGTTTTCTCATTACCAACAACGACAAAACTCCTTTCGTTCCACCATGTTTGAACACTCTGCAACTGCTTCACCCCTTCCTTCATCTTCTTCTCTCTTCCCTCAGCTCACTCATTTCGACACCCTCTCCCAGCTCAACAACTCCGACACCAGTTACTGCTACCACAACAACAGTACCAGTAACTGTAGCAGTGGCTATAGCAGTTATGGTGGCTCTCCCACTTCTGTTCCTACTCCCACCTTTATGCAGAGGAGTGTCAGTAGTAACTCCTTCAACTACACCAACAATGGCACCCACCACCCTCTCTCTGCTTTCTTCGCTGAATTGCTCGACTCCCATGATGCTCCTGTTCGGAGAGTTTGCAGTGCTGGTGATCTTCAGGGGATTAATGGAATTCAACACAATCACCTCTCGGATAGTCCGTTGTCAAGCGAAAGGAGTATGATTATAGAAGGTATGAACAGAGCTTGTAGATATAGCCCAGAGGAGAAGAAGGTGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAATTTCAACAAGAAAATCAAGTATGCTTGCAGGAAAACATTGGCAGACAGCAGGCCACGCATCAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAACACTTCAATTCAGTGGAGCCAAAGTGGTGGAGACGAAGAGGATGAAGAAGATGAGAATTGGTTCACCATCTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAAGAGTCTCAAGGCAGCTGTTCCTCCTTTGGTGTATTCTATTAG 831 0.4489 MQTFALTEPFIYLHSFNQFSHYQQRQNSFRSTMFEHSATASPLPSSSSLFPQLTHFDTLSQLNNSDTSYCYHNNSTSNCSSGYSSYGGSPTSVPTPTFMQRSVSSNSFNYTNNGTHHPLSAFFAELLDSHDAPVRRVCSAGDLQGINGIQHNHLSDSPLSSERSMIIEGMNRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNTSIQWSQSGGDEEDEEDENWFTILDSLVAANFAQESQGSCSSFGVFY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2515g00033 276 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 251 IPR045281 GO:0009909
Vium2515g00033 276 ProSiteProfiles CCT domain profile. 181 223 IPR010402 GO:0005515
Vium2515g00033 276 Pfam CCT motif 183 223 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2515g00033 Vium-Chr2515 273634 275912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2515g00033 177 228 C2C2-CO-like Transcription Factor Family AT5G15850 48.077 4.26e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium2515g00033 CCT 1.1e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2515g00033 - - gmx:102661609 345.895