Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2515g00028 ATGGAGCAGTCAGAAAAATCGCCGAAGAAAATATCCTCAGTGAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAAACACTTCAACTGCAACGAACTCGCGCGTGCGCTCACAACCGCTTTGGAAACCGTGGACGGAGTCGGAGGAGCCGCGCAATGAAATCACCGCCACGTCGTGGATGGCCATTAATCCGGCGGCGCAAGCAGACGCAGAATGCGACACGGCGGCGCAGAGGGCCGCGGAGTGGGGATTGATGCTCCGAACCGACACTGAGACCGGCAAGCCGCAGGGCGTGGCGGTGAGGAACTCCGGCGGCGAGGAACCCAACGTTGCCAAACTTGCCGCCACTGCTTCGTCTTCCAGGAAGAACTCTCAGAACTCCGCGAGAACCTCCGGCGACTCCTCCTCTGATGGCGGAATCGGCGTCCTGGATGGGATTCCGAGAATTTCGGAGGACGTGATGGGTGCTTTGTCGGCTTTCCAACAAACTTTCGTGGTCTCGGATGCTACCAAACCCGATTACCCGATCCTGTATGCGAGTGGCGGGTTCTTTAAAATGACGGGTTATACGTCGAAGGAAGTTATCGGGAGAAACTGTCGATTTTTACAGGGTGCGGATACTGATCCCAGTGACGTGGCAAAGATAAAGGAAGCATTGGAAGCTGGGAAAATCTACTGTGGAAGGCTATTAAATTACAAGAAGGATGGAACACCTTTCTGGAACCTTCTCACGATTTCCCCGATCAAGGATGAAGATGGCAAGGTCCTCAAGTTTATCGGGATGCAAGTGGAGGTTAGCAAGCACACGGAAGGGTTGAAGGAGAAGACGCTACGTCCCAATGGATTACCGGAATCCTTGATTCGATACGATGCACGCCAGAAAGAGAAAGCTACAAACTCAGTATCTGAGTTGGTGCAGATCATGAAGCGCCCCCGAGCATTGAGTGAATCTGCAAGCAGACCCTCCATCAGAAAATCAGGATTTGCTGAGGAAGAAAAACAGTCACTACAGGAAGAAGAAGAGGAGGAGGAAGAGGAGGAGAAAGAGAAAGCAGAAAAAATATTCAGAAGAAAATCTGAGAGTGGGGTTTCATTTGGACGCAAATCCGAAGGAGGAAATAAAATTTCAATGCAACGAATCAGTGAAGTACCTGAAAATAAACTGAAAAACTCTCAGCGCCGTTCTTTCATGAGGTTCAGGCGGAAAAGTCGGTCCAACGATGAAAGCGTGGAAAATGAAGTTATTGAGGATGTCAGCTCTGATAGTGAGGATGGTGAGAGGCCTGATAGTTTTGACGTAGATGAGAAAGAAAAGCAGAGGGAAAAAAGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTTGTCATTACTGACCCAAGGCTTCCAGACAATCCAATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAACTGCAGGTTTCTACAAGGACCTGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTGATTAATTATACAAAGAGTGGGAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTAGATGGTAGTCAACATGTAGAGCCTCTTCAGAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAAATGGTCAAACAAACTGCTGAAAATGTTGATGTGGCAGTGAGAGATCTTCCGGATGCTAATACGAAACCAGACGATTTATGGACAAATCATTCAAAAGCAGTTCACCCCAAACCTCATAGGAAGGATAACCCTGCATGGAAATCTATCCAGAAGGTCCTACAAAGTGGAGAACAAATAGGCTTAAAGCACTTTAGGCCGATTAAACCTTTAGGATCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTAAGAGGAACAGGTCAATGTTTTGCCATGAAGGCTATGGATAAGAGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATTCTTGACAAGCTGGACCACCCTTTTCTACCTGCATTATATGCTTCGTTTCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGGGGAGAATTATTTATGCTTCTTGACCAGCAACCAACTAAGGTTCTAAAGGAAGACGCCGTGAGATTTTATGCAGCTGAGGTAGTGATTGCATTGGAGTATCTTCACTGCCAAGGGATAATATATCGAGATTTGAAGCCTGAAAATGTGTTAATCCAGAGCAATGGGCATGTGTCCCTAACAGACTTTGATTTGTCATGTTTAACTTCTAGTAAGCCACAGCTTATAATTCCAGCTTCCAATTCAAAAAAGAAGAAGAAGAAGAAACAGAAAAGTCAGGAGGTTCCAATGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCCCCGGAAATTATAACTGGTTCTGGTCACACTAGTGCTGTTGATTGGTGGGCGCTAGGCATTCTTATATATGAAATGCTCTATGGATATACTCCATTCCGAGGGAAAACAAGACAAAAAACGTTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGGTTAGTCTCCAGGGAAAGCAGCTAATTTATTGGTTATTGCAGAGAGATCCCAAAGACAGATTGGGGTCACGTGAAGGAGCAAATCAAATTAAACGTCATCCTTTCTTCAAAGGTGTAAATTGGGCACTGGTTCGTTGCATGAAACCTCCTGAACTTGATGCTCCTCTCTTACCGAAAACTGAAGAAGAAAAAGAAGACAAAGATATGGAGGATTTACAGACAAATGTTTTCTGA 2949 0.4503 MEQSEKSPKKISSVRSSFPRDPRGSLEVFNPNTSTATNSRVRSQPLWKPWTESEEPRNEITATSWMAINPAAQADAECDTAAQRAAEWGLMLRTDTETGKPQGVAVRNSGGEEPNVAKLAATASSSRKNSQNSARTSGDSSSDGGIGVLDGIPRISEDVMGALSAFQQTFVVSDATKPDYPILYASGGFFKMTGYTSKEVIGRNCRFLQGADTDPSDVAKIKEALEAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGLKEKTLRPNGLPESLIRYDARQKEKATNSVSELVQIMKRPRALSESASRPSIRKSGFAEEEKQSLQEEEEEEEEEEKEKAEKIFRRKSESGVSFGRKSEGGNKISMQRISEVPENKLKNSQRRSFMRFRRKSRSNDESVENEVIEDVSSDSEDGERPDSFDVDEKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLQNCIAEDTAKEGEQMVKQTAENVDVAVRDLPDANTKPDDLWTNHSKAVHPKPHRKDNPAWKSIQKVLQSGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQCFAMKAMDKSVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFMLLDQQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSSKPQLIIPASNSKKKKKKKQKSQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANQIKRHPFFKGVNWALVRCMKPPELDAPLLPKTEEEKEDKDMEDLQTNVF 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2515g00028 982 FunFam LOV domain-containing protein 650 734 - -
Vium2515g00028 982 CDD STKc_phototropin_like 649 964 - -
Vium2515g00028 982 FunFam Putative LOV domain-containing protein 735 953 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 317 450 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 93 148 - -
Vium2515g00028 982 ProSiteProfiles PAC domain profile. 229 283 IPR000700 -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 1 58 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 27 46 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 355 370 - -
Vium2515g00028 982 CDD PAS 182 271 IPR000014 -
Vium2515g00028 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Vium2515g00028 982 SMART pac_2 527 569 IPR001610 -
Vium2515g00028 982 SMART pac_2 232 274 IPR001610 -
Vium2515g00028 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 176 268 IPR035965 -
Vium2515g00028 982 ProSiteProfiles Protein kinase domain profile. 651 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2515g00028 982 SUPERFAMILY Protein kinase-like (PK-like) 630 961 IPR011009 -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 430 450 - -
Vium2515g00028 982 NCBIfam PAS domain S-box protein 182 275 IPR000014 -
Vium2515g00028 982 NCBIfam PAS domain S-box protein 475 565 IPR000014 -
Vium2515g00028 982 Coils Coil 332 367 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 615 630 - -
Vium2515g00028 982 FunFam LOV domain-containing protein 439 603 - -
Vium2515g00028 982 SMART serkin_6 651 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2515g00028 982 Gene3D PAS domain 169 329 - -
Vium2515g00028 982 ProSiteProfiles PAS repeat profile. 450 523 IPR000014 -
Vium2515g00028 982 ProSiteProfiles PAC domain profile. 524 578 IPR000700 -
Vium2515g00028 982 ProSiteProfiles PAS repeat profile. 155 226 IPR000014 -
Vium2515g00028 982 Gene3D Phosphorylase Kinase; domain 1 650 971 - -
Vium2515g00028 982 Gene3D Transferase(Phosphotransferase) domain 1 735 964 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 959 982 - -
Vium2515g00028 982 Pfam Protein kinase domain 653 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2515g00028 982 MobiDBLite consensus disorder prediction 960 982 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 607 630 - -
Vium2515g00028 982 Pfam PAS domain 176 272 IPR000014 -
Vium2515g00028 982 Pfam PAS domain 473 565 IPR000014 -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 119 143 - -
Vium2515g00028 982 MobiDBLite consensus disorder prediction 340 354 - -
Vium2515g00028 982 FunFam Putative LOV domain-containing protein 169 325 - -
Vium2515g00028 982 Gene3D PAS domain 438 603 - -
Vium2515g00028 982 SMART pas_2 452 521 IPR000014 -
Vium2515g00028 982 SMART pas_2 157 226 IPR000014 -
Vium2515g00028 982 CDD PAS 465 565 IPR000014 -
Vium2515g00028 982 ProSitePatterns Protein kinases ATP-binding region signature. 657 680 IPR017441 GO:0005524
Vium2515g00028 982 PANTHER FLIPPASE KINASE 1-RELATED 342 960 - -
Vium2515g00028 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 466 565 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2515g00028 Vium-Chr2515 200027 211884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2515g00028 1 982 AGC Kinase Gene Family AT3G45780 68.519 0.0 1329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium2515g00028 Pkinase 3.5e-66 CL0016