Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2515g00026 ATGGGTTGCTTTAGTTGCACAGGCAAACCAAGCAAAAAATCCAACAACGTTAATCGCACCCAGAAGCACATTGCTGCTGTTGTCAAAATTAATTTGAAAGTGAATGGTAAAAGTGAAGATAATCATCATCGAAAGCCTGATCAGCTATCTGTGGACGTGAAGAATTTGAATTTACAAGAGGTTTCTGATGAGGTAAACGTTAGAAGTTACCGAGCACAGACATTTACTTTTGACGAGCTTGCAGCTGCAACAAGGAAATTTAGGTCAGATTGCTTTCTGGGCGAAGGAGGGTTTGGCAAGGTTTATAAGGGGTGCATAGAGAAATTAAATCAGGTTGTGGCAGTAAAGCAACTAGACCCTTATGGGCATCAAGGAATTAGGGAATTTGTTGTTGAAGTATTGACATTGAGTTTGGCAGATCACCCTAATTTGGTAAAGTTAATTGGGTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAAGCGTTTGCAGGATCTTCCACGTAGCAGAAAAGCACTTGATTGGAACACGAGAATAAAAATTGCAGCTGGTGCAGCTAGAGGGTTAGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATCTACCGTGATTTGAAGTGCTCCAATATTTTATTAGGTGAGGATTATCATCCCAAGTTATCAGATTTTGGGTTGGCAAAAGTAGGACCAAGTGGTGATAAGACCCACGTTTCAACAAGAGTTATGGGAACATATGGGTATTGTGCACCAGATTATGCAATGACGGGTCAATTGACGTTCAAGTCTGACATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATCACAGGCAGAAAGGCCATTGACCACATGAAACCTCCTAAAGAACAAAATCTTGTTGCATGGGCAAAACCTTTGTTCAAAGACAGAAAAAGATTCTGTGAGATGGTTGACCCATTGCTTGAAGGTCGGTATCCAGTAAGAGGTTTGTACCAAGTTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAACCTAGTATGCGGCCTGTCATAGCTGATGTGGTTACAGCTCTAAATTACCTTGAATCCCAGAAATACGATCCCCAAGTTCATCTAATTCAAAGCTCTAGAAATGGTTACTATTCCTCAAGAGCAAGAAGCCAAAATCGTAGAGCAGCTGGCTATGGCTCTGAGCCAAGACCGTGCAAAGTTGGTCATAAACTACTTGTCAGTGATGGCAATAGTAGTAGTGGTTCGGAGTCAGAAAGCTATATAAAAGGTCTATCTTCTCCAAGAACACGAAGTGAAGGACATCAACATTTTTATAGAAATAATGATTCCGGGACAGACAGTTCTGCAGATTAG 1374 0.4119 MGCFSCTGKPSKKSNNVNRTQKHIAAVVKINLKVNGKSEDNHHRKPDQLSVDVKNLNLQEVSDEVNVRSYRAQTFTFDELAAATRKFRSDCFLGEGGFGKVYKGCIEKLNQVVAVKQLDPYGHQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLEKRLQDLPRSRKALDWNTRIKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDHMKPPKEQNLVAWAKPLFKDRKRFCEMVDPLLEGRYPVRGLYQVLAIAAMCVQEQPSMRPVIADVVTALNYLESQKYDPQVHLIQSSRNGYYSSRARSQNRRAAGYGSEPRPCKVGHKLLVSDGNSSSGSESESYIKGLSSPRTRSEGHQHFYRNNDSGTDSSAD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2515g00026 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vium2515g00026 457 SUPERFAMILY Protein kinase-like (PK-like) 73 387 IPR011009 -
Vium2515g00026 457 MobiDBLite consensus disorder prediction 413 438 - -
Vium2515g00026 457 Pfam Protein tyrosine and serine/threonine kinase 92 360 IPR001245 GO:0004672|GO:0006468
Vium2515g00026 457 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vium2515g00026 457 Gene3D Phosphorylase Kinase; domain 1 55 163 - -
Vium2515g00026 457 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2515g00026 457 FunFam probable serine/threonine-protein kinase RLCKVII 59 163 - -
Vium2515g00026 457 MobiDBLite consensus disorder prediction 382 457 - -
Vium2515g00026 457 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2515g00026 457 PANTHER OS07G0668900 PROTEIN 3 372 - -
Vium2515g00026 457 CDD STKc_IRAK 93 362 - -
Vium2515g00026 457 Gene3D Transferase(Phosphotransferase) domain 1 164 383 - -
Vium2515g00026 457 FunFam Serine/threonine-protein kinase PBS1 164 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2515g00026 Vium-Chr2515 189443 192616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2515g00026 1 364 Glycoside Hydrolase AT3G07070 57.260 3.21e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium2515g00026 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2515g00026 - - gmx:100794680 688.337