Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2515g00017 ATGTTGGATCTTAATCTGAATGCCGACTCGACTCAGAGCCAAGACTCGGTGATGCTGTTGGACAAGTTTCCCGAAGCTTCTTCGGGAACTTCGAATTCCTCCGTGGTGAATGCGGAAGGGTCGAGTAACGAGGACTCGTGTTCGACACGCGCCGGCGAAGTGTTCACCTTCAATTTCGGAATCCTTAAGGTCGAAGGTGCCGACGACGTCGTCGTCTCAGCGACGAAGGAGCTGTTTCCGGCGAGCGCGGAGAATAGGCAAGGACAGAGTTCGACGTCGTCGTTTCAGGCTAGGAAGAGTTTGGTGGATCTCTCGCTGGATCGCCAAAACGGCGAGGTGAAGGTGGTTCAGGTTCAGCAACAACCACAGGTGAAGAAGAGTAGGAGAGGTCCACGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGCGGATTTGACACCGCTCATGCCGCAGCCAGGGCCTATGATCGAGCTGCAATTAAGTTCAGGGGACTTGATGCGGATATCAATTTTAATCTTGTTGATTATGAGGAGGATTTAAAACAGATGAAAAATCTTTCCAAGGAGGAGTTCGTGCACATACTCCGCCGTCACAGTACCGGTTTCTCAAGGGGGAGTTCAAAATACCGGGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGAAAAAAGTATATATATCTTGGGCTTTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGTACATATGACAGCGAAATGAAACCTGAAGCTATCAATGAAGGTGGCAATCACGATCTTGATCTCAATCTGGGCATAGCAACTCCAGGACATGGTCCCAAAGAAAACATAGGTCATCTTCAGTTCCAGCAAGTCCCATGCAGCACGCAACCCGGAAGAATTTCAAGGATGGAGACTAATTTTAGTTCAGTTATTGGTGATCCTTCTTTGAAAAGGCATGTTGTAACTGAAGAGCGTCCTTCTGTATGGAACGCCGCACATTACACTTTCTTTCCCAATCTGGAAATAGCAGAGAGAATCGGCATAGATCCTTCAAAAGGAGTCCCCAACTGGGCGTGGCAAACACATGGCCAGGTTACTGCCAACCCAGTACCACCGTTCTCTTCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCGCATGCCATCTTTCCAACAAAATCAGTGAACTCAATTCCGCAGAACCTCTGTTTCACTTCAGCCAGTGCACCAGGTAGCAATACACCGCAATTATATTACGAGGTCAAGTCCACTCAGGCACCATCCCATCCTATCTAG 1428 0.4881 MLDLNLNADSTQSQDSVMLLDKFPEASSGTSNSSVVNAEGSSNEDSCSTRAGEVFTFNFGILKVEGADDVVVSATKELFPASAENRQGQSSTSSFQARKSLVDLSLDRQNGEVKVVQVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYDSEMKPEAINEGGNHDLDLNLGIATPGHGPKENIGHLQFQQVPCSTQPGRISRMETNFSSVIGDPSLKRHVVTEERPSVWNAAHYTFFPNLEIAERIGIDPSKGVPNWAWQTHGQVTANPVPPFSSAASSGFSISATFPPHAIFPTKSVNSIPQNLCFTSASAPGSNTPQLYYEVKSTQAPSHPI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2515g00017 475 MobiDBLite consensus disorder prediction 24 47 - -
Vium2515g00017 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 318 - -
Vium2515g00017 475 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Vium2515g00017 475 CDD AP2 137 192 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 Pfam AP2 domain 228 278 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 FunFam AP2-like ethylene-responsive transcription factor 228 288 - -
Vium2515g00017 475 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Vium2515g00017 475 MobiDBLite consensus disorder prediction 115 138 - -
Vium2515g00017 475 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
Vium2515g00017 475 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
Vium2515g00017 475 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Vium2515g00017 475 MobiDBLite consensus disorder prediction 25 47 - -
Vium2515g00017 475 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2515g00017 Vium-Chr2515 103671 107756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2515g00017 74 312 AP2-EREBP Transcription Factor Family AT4G36920 68.254 2.07e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2515g00017 AP2 2.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2515g00017 K09284 - gmx:100777102 788.489