Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2515g00008 ATGGATCCTTCTAGTGAACAACCCCAGCAAATGTCTAGCCAGACAGTGGAGAAGAAACCAAGGCCTAATCCAGAACAAGCTCTGAAATGCCCAAGATGCGATTCCACCAGCACAAAATTTTGCTACTACAACAACTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCCGAAAGAAGCGATCATCATCATCATCATCGTTAAAGAGGGATCATGATCAGAGTTTCAAACCGAATCTTAACCCACTCACTACATTCCCTCAGCTGTGTTATGGCTCCAATGACTTCACTCTAGCATTAGCAAGACTTCAAAAACAATCATGTGGCCAATTGGGTTACAATGACAGTGAAATTTCTGCGCTGGGGAACCCCACAGGCTCGTTCTGTGACGTTCTGAGCAATTCAGGCATGAATCCCTACTCAGACCACCCTTCATTTTTGGACGCAATTCGAAGTGGGTTCCTTGAAACGCAAAACCATCTTCAGAATTTGTATTACATGTACGGAAATGGGGACATTGGGGAGGTAGATAATGGCAATTCTGGTGGAGTTGGAATCAGTGAAGAGATGATGCTCCCTTATAATCAAGTGATGAGCAATGCAGCCACTCAATCAGTGAGTGCATTACTGAAGCAAGAACAGTGTGGTGGCAGTGAGCAAAGTGAAAGGAAGCTGTTGGGAGGTTCGCCATGGCAGCTTAATGCAGACACAAACATTGCTGAAATTGATTCAGGAAGAGCAATTGAAAGTTGGAACAATTTCACATCTTCTTGGCATGGACTTCTCCAGAGTCCCCTAATGTAG 864 0.4456 MDPSSEQPQQMSSQTVEKKPRPNPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSSSLKRDHDQSFKPNLNPLTTFPQLCYGSNDFTLALARLQKQSCGQLGYNDSEISALGNPTGSFCDVLSNSGMNPYSDHPSFLDAIRSGFLETQNHLQNLYYMYGNGDIGEVDNGNSGGVGISEEMMLPYNQVMSNAATQSVSALLKQEQCGGSEQSERKLLGGSPWQLNADTNIAEIDSGRAIESWNNFTSSWHGLLQSPLM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2515g00008 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 194 IPR045174 GO:0003700|GO:0006355
Vium2515g00008 287 MobiDBLite consensus disorder prediction 73 99 - -
Vium2515g00008 287 MobiDBLite consensus disorder prediction 1 20 - -
Vium2515g00008 287 MobiDBLite consensus disorder prediction 1 29 - -
Vium2515g00008 287 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Vium2515g00008 287 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Vium2515g00008 287 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2515g00008 Vium-Chr2515 18336 19982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2515g00008 26 287 C2C2-Dof Transcription Factor Family AT2G28510 40.146 2.24e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2515g00008 zf-Dof 6.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2515g00008 - - gmx:778104 457.603