Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2506g00002 ATGAGTGTCATCGACATTCTCACCAGAGTCGATTCCATTTGCAAGAAGTATGACAAATACGATGTCGAGAAGCACCGCGATTCTAATGTCCCTGGCGACGATGCCTTCGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCATTGCTTCAGAAAGCAGAAACGGCTTCCAAGGAGAAAGGTAAGGCGTCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGACTGGCTGTGAAAAAGGTCAAGGGTTTATCTTCACAAGAATTTGCTGCCCGTAATGATTTGGCTCTTTCATTGCCAGACAGAATCCAAGCCATCCCAGATGGGTCTCCTCCTGTGCCAAAACAAACCGGAGGCTGGGCTTCTTCTGCCTCACGTCCTGAAATTAAGTTCGATTCAGATGGGCAATTTGATGAAGATTACTTTCAACAGTCTGAGCAATCAAGCCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGATCAAGGTTTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAACATGGCACATGATATGAATGAGGAACTGGATCGACAAGTTCCTCTCATGGATGAAATTGACACTAAGGTGGATAAGGCATCATCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTAAACCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAACGTACTAAAGAAATGA 798 0.4424 MSVIDILTRVDSICKKYDKYDVEKHRDSNVPGDDAFARLYASVDADIEALLQKAETASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLALSLPDRIQAIPDGSPPVPKQTGGWASSASRPEIKFDSDGQFDEDYFQQSEQSSQFRQEYEMRRMKQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2506g00002 265 Pfam SNARE domain 207 256 IPR000727 -
Vium2506g00002 265 MobiDBLite consensus disorder prediction 119 141 - -
Vium2506g00002 265 Gene3D - 170 231 - -
Vium2506g00002 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Vium2506g00002 265 FunFam Putative syntaxin-71-like 170 231 - -
Vium2506g00002 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium2506g00002 265 SMART tSNARE_6 165 232 IPR000727 -
Vium2506g00002 265 CDD SNARE_Qc 175 230 - -
Vium2506g00002 265 Coils Coil 40 60 - -
Vium2506g00002 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vium2506g00002 265 PANTHER SYNTAXIN 46 252 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2506g00002 Vium-Chr2506 43059 54058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2506g00002 1 264 SNARE and Associated Proteins AT3G09740 76.692 5.79e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2506g00002 K08506 - gmx:100819272 479.559