Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2504g00001 ATGTCTCAGATTCATTCTCCAATGGATGTCGATGGTGAGAAGTGTTATGAGGGCACCAAACGTAAAAGAGGGTTCAGGAAAAAAAAGCTTCTTGTCAATGACAGAGTCGAGGTAAAAAGCGTGGAAGAGGGTTTTCTGGGTTCATGGCACCCGGGGACGGTGGTCCGTTGCGAGAAGCAGAAGCGTTATGTCCAATATGACAATATTCTAGATGATGATGAATCAAAATACCTTGTGGATGTGGTGTGTGTTTCATCTGTTTTGGATGGTCATAGTTCTTCTGATTTTAGCAATGAATATGGATTCATCAGACCTTTGCCTCCTCCGTTTGAGTTTGGGGAGAGGGACCTTCCTTTTGGTCTGTGTGTTGATGTAAATTATCAAGAAGGCTGGTGGGAAGGTGTTATATTTGATCACTGCAATGGAATGGGGGAGAGGAGCGTGCTCTTCCCAGATTTGGGTGATGAAATGAAGGTAGGAACTCATCAGTTGCGGATAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAACCACGAGGGAAGTGGGTGTTCCTTGAAGTAGTTCAGGAGTGTGAAAAGGAATCCTTGGTTGCAGTTTCAGTGAAGCAAATATGGTATGATATAAGGACCAGAAAGGATTTTGACAATGTAAAACATTGGACTTGTAATGATAAGGACTTGTGGAGAGCCCTTGTAGTGGAAGTGGTTGGTGACTACTATCTTCTCACACTAGAAGAAGTTTTCCCAGCTTTAAACCTTCCGGAGGAGTTCTTGAAAGAAACACCAGAAGTGAACTCAGTTGAACCTACTGACAACTTTCATTGTGATTCTGCACACACTAATATATTTGGTTCTGACATTGGAGTTTCAGATAGCCCTATGGAAAAAAGTGGTAACATCATTTGCTTTCAAGAGGAATGCGATAGAGATCCTTTGATGGATGGGGCATCTGAGAAGAAAATTATTTTGCAGGAGGAACCTATATCTCCTGTTCAGGAGATCATGATTGGTGCTGGTGAAATAAAGCAGGCTGCTACCTGTTGTTCAAAGAAGAGAAAACGCAGAAGGTCAGTGTCCATTAGTTGGAAACCTGTGGTACTGAGCGAGGTTGAATTCTGTCCTGATGTTGTTAACCAGTATTTACTTGGATGTGGTAGCAAGACCATTAGGGAACTTTTGAAGATTAAAGTACGGAAGCATCTAGCATATCTTGGATGGAAAATTGAGTGGAGAGATAGACAACCTGGACGTGGATGCTACAGGTACAAGTCACCTGATGCACAGGACGAGAAGTTTTACGCTTCAATTGTTGAAGTCTTGACACACATTCAATTGGAGTCCAACGTGAACACTGTGCATCCCCAAATTGACCACAGTAGGATGGGTTCTGCAAATGACTCTGATATTTCACTTTTGCTTTCAGACCAACCCCCAAATGACCAGGATCTAGATGTTTGTCCTCCAAAGGAAAGTGTTGGGCATGTTGATAGTGATGATCTATCGCAAACCTTGTCCCATTTTCTTCAAAAAGAGCCTGAAGTGCATACTGCTTCACCAGCAAGTGTATCGACTGAGAATAGAAAACATAAACACACCAGGAATTCAAAGGCCATCATGCCAAAGTGCGACATGAAAGGGTCACGTACAAAATGTCTAAGATCAAGCAAAAGGGTGCTGTCTGCCCCAAGTCTGTCACACCAACGACCTCAAAATGTTGTGTCTTGGTTAATGGGTAGGGGGGTGCTGATGTCAAGATGTAAGGTCTATTACTGGGTAGAAGGAGGCAGTAACACTGATTCAGCTCATGGGAGGATTACTTATTATGGGATTAAGTGTAGCTGTTGCCAGGAAATATATGGTATTCGGGGCTTTGTAAATCACGCTGGTGGAAGTGGTGACTGCAGGCCTTCTGCCAGCATATTTTTGAAGGATGGTAGGTCACTCTTAGATTGCATGATAAAAGAAATGCACGATGATAGAACAAGGGAAGATATGAACAGACCATGCAATGATCTGTTGAGAGGAGAGAATGACGACATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATATTATGCGACCAATGTCCATCCGCATTTCATAGGACATGTCTTGGTTTGAATGATATCCCTCATGGTGACTGGTTTTGCCCATCATGTTGTTGTGCGATTTGCAGCCAAATCAAAACAGAAGAGTCTGAGAATGTTCTTTTTCTTACTTGCATTCAATGTGAACATAAATATCACGTTGGATGCTTGAAAAATAGAGAAAAGGATGAGTCAAGAAGATATATGGAAAATTGGTTCTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTACAAAGTCTATTAGGAAAGCCACTTATTGTGGGTCCTAACAATCTAACTTGGACATTGGAGAAGTTTAACAACTCTGAGAGTTCTGCTGCTGGCAGTTCTCTGAATGACTTATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCTAAAGAACCCTTTCACTGGTAGAGATATCATTGATGATGTTATATTCAACTCTAGGTCTGAGCTCAATCGATTGAATTTCCAGGGTTTCTACAGTGTACTTCTGGAGCAAAATGAAGAATTGATTAGTGTAGCAACTATTAGGGTGTTTGGACAGAAAGTAGCTGAGGTACCACTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAGCTTGAGAAGAACCTGATGCATCTGGGAGTGGAGAGATTAGTCTTGCCTGCTGTTCCTTCTGTGCTAGAAACTTGGACCAAATCTTTTGGCTTTGCACAGATGTCAAATTTTGACAGGTCACAGTTCTTGGACTGTGCTTTCCTAGATTTTCAGGAAACTGTCTTGTGCCAGAAGTTTCTGACAAGGATTCCATCTCCCCAGTCAGGTGTAACAAGAGAAACAGAACGAAAAGCAAAGGATGTTTTTACTCTTAGATATAGAAATGAGTTTGACAAGTCCAGTTCAGCATCAGAAGTAGACCAAGCTGAAGAGATAGAGAGAAGTAGGATGGATGAACAAGTGCTGGAGTGTGTTTTTACTCTTCCAACTTCATAA 3129 0.4193 MSQIHSPMDVDGEKCYEGTKRKRGFRKKKLLVNDRVEVKSVEEGFLGSWHPGTVVRCEKQKRYVQYDNILDDDESKYLVDVVCVSSVLDGHSSSDFSNEYGFIRPLPPPFEFGERDLPFGLCVDVNYQEGWWEGVIFDHCNGMGERSVLFPDLGDEMKVGTHQLRITQDWDEATENWEPRGKWVFLEVVQECEKESLVAVSVKQIWYDIRTRKDFDNVKHWTCNDKDLWRALVVEVVGDYYLLTLEEVFPALNLPEEFLKETPEVNSVEPTDNFHCDSAHTNIFGSDIGVSDSPMEKSGNIICFQEECDRDPLMDGASEKKIILQEEPISPVQEIMIGAGEIKQAATCCSKKRKRRRSVSISWKPVVLSEVEFCPDVVNQYLLGCGSKTIRELLKIKVRKHLAYLGWKIEWRDRQPGRGCYRYKSPDAQDEKFYASIVEVLTHIQLESNVNTVHPQIDHSRMGSANDSDISLLLSDQPPNDQDLDVCPPKESVGHVDSDDLSQTLSHFLQKEPEVHTASPASVSTENRKHKHTRNSKAIMPKCDMKGSRTKCLRSSKRVLSAPSLSHQRPQNVVSWLMGRGVLMSRCKVYYWVEGGSNTDSAHGRITYYGIKCSCCQEIYGIRGFVNHAGGSGDCRPSASIFLKDGRSLLDCMIKEMHDDRTREDMNRPCNDLLRGENDDICSVCQYGGELILCDQCPSAFHRTCLGLNDIPHGDWFCPSCCCAICSQIKTEESENVLFLTCIQCEHKYHVGCLKNREKDESRRYMENWFCGKECEQIYAGLQSLLGKPLIVGPNNLTWTLEKFNNSESSAAGSSLNDLLAEKYSKLSVALSVMHECFDPLKNPFTGRDIIDDVIFNSRSELNRLNFQGFYSVLLEQNEELISVATIRVFGQKVAEVPLVGTRIQYRRLGMCRILMNELEKNLMHLGVERLVLPAVPSVLETWTKSFGFAQMSNFDRSQFLDCAFLDFQETVLCQKFLTRIPSPQSGVTRETERKAKDVFTLRYRNEFDKSSSASEVDQAEEIERSRMDEQVLECVFTLPTS 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2504g00001 1042 Pfam Tify domain binding domain 604 654 IPR032308 -
Vium2504g00001 1042 Gene3D - 850 961 - -
Vium2504g00001 1042 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 863 953 IPR016181 -
Vium2504g00001 1042 SMART agenet_At_2 28 96 IPR014002 -
Vium2504g00001 1042 SMART agenet_At_2 115 172 IPR014002 -
Vium2504g00001 1042 CDD NAT_SF 872 933 - -
Vium2504g00001 1042 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 817 979 IPR000182 GO:0016747
Vium2504g00001 1042 MobiDBLite consensus disorder prediction 457 478 - -
Vium2504g00001 1042 CDD Tudor_Agenet_AtDUF_rpt1_3 32 108 - -
Vium2504g00001 1042 ProSiteProfiles Zinc finger PHD-type profile. 679 724 IPR019787 -
Vium2504g00001 1042 SUPERFAMILY FYVE/PHD zinc finger 661 721 IPR011011 -
Vium2504g00001 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 723 IPR013083 -
Vium2504g00001 1042 SMART ring_2 682 721 IPR001841 -
Vium2504g00001 1042 SMART ring_2 723 778 IPR001841 -
Vium2504g00001 1042 MobiDBLite consensus disorder prediction 457 498 - -
Vium2504g00001 1042 MobiDBLite consensus disorder prediction 511 535 - -
Vium2504g00001 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 724 779 IPR013083 -
Vium2504g00001 1042 PANTHER PHD FINGER PROTEIN 12 381 1027 IPR042163 GO:0003714|GO:0045892
Vium2504g00001 1042 SMART PHD_3 681 722 IPR001965 -
Vium2504g00001 1042 SMART PHD_3 723 775 IPR001965 -
Vium2504g00001 1042 Pfam PHD-finger 681 722 IPR019787 -
Vium2504g00001 1042 Pfam Agenet domain 33 108 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2504g00001 Vium-Chr2504 700 6182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2504g00001 23 921 PHD Transcription Factor Family AT5G58610 36.326 1.47e-177 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium2504g00001 Agenet 4.8e-17 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2504g00001 - - vra:106763506 1998.4