Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium249g00003 ATGGCCTTAGATAACTTGGAGGAGGTTGTGCCCCAAAACGAAAAGTGGAAATCTTCCAATGAAGTCATTGCAGATTCTGATATAAACGCCTCGAGTGGCTTTGACTGCAACATCTGCCTTGAGTGTGTGCAAGAACCAGTGGTCACACTCTGTGGTCATCTTTATTGCTGGCCATGCATATACAAATGGCTTCATTTTCAACGTACCTCTTTTGACAGTGAAGAGCAACAGAATCCACAATGTCCAGTTTGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGCCGTGGCCTTACCACAAGACCTTCTAAGGGGAAAACACATCAAGTTGGGAATGTCATACCACAAAGACCTCATGGTCCCAGATCATTGAGTACCAGCAGGGTTTCCCAACCTATTTCTCAAAGTTATCATGATCCCTATAGTAATCCTTATTATACTCAGCAATTCAACTCAGTTCCAAACGGTTATACCTCACCGATGCTCAGAACAAGTGGTTCACTGGACAACTCATTTGGAATCTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAACCAGGTGACAAACATGCATCCATATGCTAATTCGTACAATCTTTCTGGGATCAGTAACCCAAGGATGAGAAGACATTTAATGCATGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTATGCTGCCTAGTTTTGTGTCTCCTTTTATTCTGA 723 0.4191 MALDNLEEVVPQNEKWKSSNEVIADSDINASSGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHFQRTSFDSEEQQNPQCPVCKSEVSQSSLVPLYGRGLTTRPSKGKTHQVGNVIPQRPHGPRSLSTSRVSQPISQSYHDPYSNPYYTQQFNSVPNGYTSPMLRTSGSLDNSFGIFGEMIYARVFGNQVTNMHPYANSYNLSGISNPRMRRHLMHVDKSLSRISCFLLCCLVLCLLLF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium249g00003 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vium249g00003 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 117 IPR013083 -
Vium249g00003 240 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Vium249g00003 240 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 19 98 - -
Vium249g00003 240 Pfam RING-type zinc-finger 36 82 IPR027370 -
Vium249g00003 240 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Vium249g00003 240 SUPERFAMILY RING/U-box 23 91 - -
Vium249g00003 240 MobiDBLite consensus disorder prediction 102 132 - -
Vium249g00003 240 SMART ring_2 36 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium249g00003 Vium-Chr249 65633 68839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium249g00003 21 240 C3H Transcription Factor Family AT4G28270 38.197 2.12e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium249g00003 K10666 - gmx:100786373 389.037