Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2499g00001 ATGGTCGCATTGTTCTCTCCTATCTTCTCACCCAAAGGCTGGCTCTTAGAGGAGGAGCCATTGGGCTATAATAATAGCCATAACCTCTTCTACAAAGATGATGCGTCTTCTGAGTACTCCTTTCCCTATCACTTTTATTCACCACAGACACAGATTGAGCTTGAAGAAAGGTCTATTGCACCATCCTCTGACCCTGCCATGGTCAAGAAACTTAGCCACAATGCTAGCGAACGGGATCGCCGCAAGAAGGTCAACAACTTGGTTTCTTCACTTCGCTCACTTCTTCCAATGGCAGATCAAACG 303 0.462 MVALFSPIFSPKGWLLEEEPLGYNNSHNLFYKDDASSEYSFPYHFYSPQTQIELEERSIAPSSDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPMADQT 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2499g00001 101 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 101 IPR011598 GO:0046983
Vium2499g00001 101 Pfam Helix-loop-helix DNA-binding domain 69 96 IPR011598 GO:0046983
Vium2499g00001 101 Gene3D - 64 101 IPR036638 GO:0046983
Vium2499g00001 101 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 99 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2499g00001 1 101 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 38.679 1.81e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2499g00001 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2499g00001 - - vum:124830770 199.904