Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2498g00003 ATGATGAAGATCAATGTAATATGGTCCTTGTTTTGCATCATAGTTCCCTTAGCATTTGGGGAGTTGAAGGTTGGATTCTATGATTCTTCATGCCCAAAAGCAGAGTCCATTGTCAATAAACTTGTGCAGAATCGATTCGATCGTGACAAGACTATTACTGCAGCTTTGCTTCGCTTGCATTTCCATGACTGTGCTGTCAGAGGTTGTGATGCATCCATACTTATAAATTCCACAACGTCTAACACAGCAGAGAAAGAAGCAGGAGCAAACAACGACGTTCGGGGCTTTGACCTAATCGATGAAGTGAAGGAAAACCTCGAATCTGCATGCCCTTCAACAGTGTCATGTGCAGACATCATAACCCTAGCTACCCGAACTGCAGTGGCCTTATCTGGAGGACCCAAATACCAAGTTCCCACCGGAAGACGCGATGGATTGGTCTCCAACGTCGACGATGTCACCATTCCAGGACCCTTCCAACCCGTTTCAGTAATTTCTCAATTTTTCAATAGGAATTTGAGCCTCACAACGCAGGAAATGGTGACCCTTTTTGGTGCACACACCGTTGGTGTCGCACACTGCGGTTTGTTTGCTAGTAGACTCTCGAGTCCTGACCCTACAATGGACCCTGTTTTGAAAGCTAAGTTGGTGAAGTTGTGCAGCAGGGGTGGTGATCCTTCTACGCCCTTGGACCAGAACACTTCTTTGCTTGTTGATAACGACTTCTACCAGCAGATTCTTGCCAAGAAAGGGGTGCTGCAGATTGATCAGCAGCTTGCCTTGGATAAAAGTACGAAAGGGTTTGTGACAGATTTGGCTTCTGACGAGGCTAAGTTCCAAAAGAGCTTTGCAAATGCGATGGTGAAGATGGGGAGTGTTGATGTTCTGGTAGGGAGTCAAGGAGAAATTCGCAAGAAATGCTCGGTCTTCAATAAACGCAGCTAG 945 0.4614 MMKINVIWSLFCIIVPLAFGELKVGFYDSSCPKAESIVNKLVQNRFDRDKTITAALLRLHFHDCAVRGCDASILINSTTSNTAEKEAGANNDVRGFDLIDEVKENLESACPSTVSCADIITLATRTAVALSGGPKYQVPTGRRDGLVSNVDDVTIPGPFQPVSVISQFFNRNLSLTTQEMVTLFGAHTVGVAHCGLFASRLSSPDPTMDPVLKAKLVKLCSRGGDPSTPLDQNTSLLVDNDFYQQILAKKGVLQIDQQLALDKSTKGFVTDLASDEAKFQKSFANAMVKMGSVDVLVGSQGEIRKKCSVFNKRS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2498g00003 314 ProSiteProfiles Plant heme peroxidase family profile. 21 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PANTHER PEROXIDASE 25-RELATED 14 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 Pfam Peroxidase 39 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 285 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 245 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Plant peroxidase signature 229 244 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 Gene3D - 25 311 - -
Vium2498g00003 314 Gene3D Peroxidase, domain 2 156 290 - -
Vium2498g00003 314 SUPERFAMILY Heme-dependent peroxidases 21 311 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 PRINTS Haem peroxidase superfamily signature 231 246 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00003 314 FunFam Peroxidase 25 160 - -
Vium2498g00003 314 CDD secretory_peroxidase 21 310 IPR033905 GO:0004601|GO:0042744
Vium2498g00003 314 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vium2498g00003 314 FunFam Peroxidase 156 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2498g00003 Vium-Chr2498 33426 36015 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2498g00003 1 311 Peroxidase AT4G26010 55.128 2.15e-122 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2498g00003 K00430 - gmx:100777946 472.626