Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2498g00002 ATGAAGTACCTCATAACCACCATTCTTACGTTGTTCTTTGTGTTTCCCTTTGCATTTGGTGATCTGAGAGTTGGGTTCTATGGCTCTAGCTGCCCCAGAGCAGAGGAAATCGTTCGACAGATTGTTCAAAGGAGATTCAACCGCGATCGATCCATTACTGCAGCCTTGCTTCGCATGCACTTCCATGATTGCTTTGTCAGAGGGTGTGACGCGTCCATATTAATAGACTCAACCAGGGGCAACCAATCTGAGAAAGCCGCAGGGCCAAACGGCACCGTTCGGGGGTTCGAGCTAATAGACGAAATAAAAAAAGCGTTGGAAACAGCGTGCCCTTCAACGGTTTCATGTGCGGATATAATAACCCTTGCCACACGTGATTCCGTTGCCATGGCAGGTGGGCCCCGATACGACGTTGCAACGGGAAGGCGTGACGGCCTCGTCTCGAGAATCTCTGATGTGTCGCTGCCTGGGCCACGTTCCACTGTGTCGGCGGCGCAGCAAGCGTTCGCCGCAAACGGCATGTCGTTGGATGAAATGGTGACGCTGTTGGGAGCGCACACTATCGGTGTGGCGCACTGTAGTTTCTTTAGCGACAGGCTCAACGACCCCAATATGGACCCTGGTTTGCGGGCCAAGTTGGGCCGGATTTGTAGGCCCAAAAAAGGCGATCCCACAAGTTTTCTGGACCAAAACACGTCGATGGTTTTTGACAATGAATTCTACAATCAAATTATTTTAAAGAGGGGTGTACTTTTTATTGATCAGCAATTGGCTTTGGACCCTTTGTCGAGTAAGTTGGTGTCGGTTTTTGCTGGAAATAGTGCTGTTTTTGAAAGGAGTTTCATTAATGCTATTGTGAAGATGGGGAACATTAGGGTTTTGGTGGGGACTGATGGAGATATTAGGAAAAATTGTAGGGTTTTTAACAAATGA 933 0.4845 MKYLITTILTLFFVFPFAFGDLRVGFYGSSCPRAEEIVRQIVQRRFNRDRSITAALLRMHFHDCFVRGCDASILIDSTRGNQSEKAAGPNGTVRGFELIDEIKKALETACPSTVSCADIITLATRDSVAMAGGPRYDVATGRRDGLVSRISDVSLPGPRSTVSAAQQAFAANGMSLDEMVTLLGAHTIGVAHCSFFSDRLNDPNMDPGLRAKLGRICRPKKGDPTSFLDQNTSMVFDNEFYNQIILKRGVLFIDQQLALDPLSSKLVSVFAGNSAVFERSFINAIVKMGNIRVLVGTDGDIRKNCRVFNK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2498g00002 310 Gene3D Peroxidase, domain 2 156 288 - -
Vium2498g00002 310 Pfam Peroxidase 38 272 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 Gene3D - 26 309 - -
Vium2498g00002 310 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Vium2498g00002 310 ProSiteProfiles Plant heme peroxidase family profile. 21 309 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PANTHER PEROXIDASE 25-RELATED 12 296 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 SUPERFAMILY Heme-dependent peroxidases 21 309 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 CDD secretory_peroxidase 22 308 IPR033905 GO:0004601|GO:0042744
Vium2498g00002 310 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 227 242 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 243 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Plant peroxidase signature 283 296 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Haem peroxidase superfamily signature 229 244 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2498g00002 310 FunFam Peroxidase 156 288 - -
Vium2498g00002 310 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vium2498g00002 310 FunFam Peroxidase 25 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2498g00002 Vium-Chr2498 9978 11408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2498g00002 3 309 Peroxidase AT4G26010 58.333 4.03e-128 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2498g00002 K00430 - gmx:100820340 483.796