Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2494g00006 ATGCGATCATCGCCGTCTTCATTGGGTTCGTCGTCTCGATCGGGTTTGCGGCTTCGTAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAGGAGTACACTCGGAACCATGGTGAGTTGAATGATGATAATGATGGGTTGAATCCCGATGCAGGAGTTCGTCGGAGCTCCCGGGTTCGCCGTGCCCCGGTGCTGCTCGACGCATCTCCCGCTCCGCCGAAGAAGCGTCGGAGGCTGCGGAAGGGTGGATTTGATCGTGGCGGGGAGAGTCCTATGAGTTTAGAGCGGGAAAATAGAGGTTCAGGTGGGTCTTGGAGTTCTAGGCTGAGATCAAGGGTTGGCAATGTAAGTTTTAGGGTAAAAGAGGAGGGGGAATCGCCACGTGGGAAGAGAAAGCTTTTTGAGAGTGTGGTGGGAAAGAAGGGTGATGATGAGGTTGGTAAGAAGGAGGAGTTGGAAGGTTTGATGCCGAAAGTGGTTAAGTCGAAAAGACCGGGGAGGATTAAAGCCACGAAGCACGATGAAGGGCATGAAGATGATGTGTCTCATGGGAGTTTGGAGGGGAGTAAGAGTCAGGAAGTGGTGCTTCTGTCGAGTAGTGACGAGGAGAGTGATTCTGAATCGGAAACTGAATTGTCGGGAGAGGATCAGATGTATGAATCAGATGGAAATGCCCCTTCTATGGTAGGAAATGAGGATGGGGATCAGATGACTGATTCGGATGGGAGTGTCCCTCTCATGGTAGAGAATGAGGAGAGGAACTTATCCAACGATTTGCAAATGAAGGAGTGTGGCGATGACATTGAATCGTCGTCTCAGGTGGAACGTGAAGATAAAGTGGATTATCAGTTAGAGGGTGCGAAGGAAAGTGAAAGTGTTGGTAATGCAGCTGAACAGGTAGATAATGAAGGATTCGTTGGTAAGGAGGTTGATGATGGTGGAAATTTCTTGAAAGATGCCAATGTTGATAAGGAGGATGATGTCAATGAAAATGTCTTGAAAGGTGTAAGTGCTGGCAGGAACGATGAGTTGAAACATGCTTCAAATGACAAGCGTGGTCACCTGCGTATCAAAGAGGGCAGGCGGTGTGGTTTGTGTGGTGGAGGGAGTGATGGTAAGCCTCCAAAAAGGTTAGCTCATGATAATGGTGAAAGCGAGAATGAAGCTTATAGTGGATCGTCATCTTCAGAGGAGACTAACTATGATATCTGGGATGGTTTTGATGATGAACCTGGTTGGCTTGGTCGTCTCTTGGGTCCTATTAATGATTACCATGGTATTACTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCCAACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTTTTCCGAGGAAGGGCATTGAAGTGCACACGCTGTGGGAGGCGAGGGGCCACCACTGGTTGTCGTGTTGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCCAGAGCTAGTGGTTGTATCTTTGACCATCGTAAGTTTCTCATTGCCTGCACAGATCATCGGCATCTCTTCCAACCTCGTGGTAGTAAATATTTAGCCCGGATAAAGAAGTTGAAGGCTAGGAAAATGATGTGGGAGATAAGGAAACGATCAAATGAAGCTTGTAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGTGAGAACAAGAGGCTTCAACGTGATTTATTGAGAATAGCCCCAGTGTACATTGGGGGTTCAGACTCTGCCTGTGAAAATTCATTTCAGGGTTGGGAATCTGTTGCTGGGCTCAGAGATGTCATCCGTTGTATGAAAGAAGTTGTCATTTTACCTCTGTTATATCCTGAGCTATTTGATAATTTAGGGCTTACGCCACCAAGAGGTGTTCTTTTGCATGGGCATCCTGGAACGGGGAAAACCTTAGTTGTCCGTGCATTGATAGGTGCATGTGCCCGTGGTGATAAACGAATTGCATATTTTGCCCGGAAAGGTGCAGATTGCTTGGGAAAATATGTTGGTGATGCCGAGCGTCAATTAAGACTATTGTTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGTCTAGCACCCCTTCGCACTAGGCAGCAAGACCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTCTGAAGTCTAGGGGTTCAGTTGTGGTCATAGGTGCAACAAACCGTCCTGAATCTGTTGACCCAGCGCTTAGGCGCCCTGGTAGGTTTGATCGGGAAATTTATTTCCCATTACCATCAATTGAGGACAGAGCTTCCATTCTCTCACTTCACACTCAAAAGTGGCCAAAACCAATTACCGGATCCTTGCTTGAGTGGATTGCAAGAAAAACACCAGGCTTTGCAGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCAGCTATTAATGCGTTGAAGAGGAATTTTCCATTGCAAGAAGTCTTGTCTTTAGCTGCCCAAGAAAAACATTCTGGTTCTAAGCCAATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGACTGGTTAGAGGCTGTTTTTTCTTCCCCACTACCCTGCTCTCGAAGAGATGCTGGAAATGCTGCCAATGATGTAGTATGCTCCCCTCTTCCAATCCAGCTTACTCCTTGTTTATTGCAGCCATTGTGCACTCTTCTTGTATCTCTACATCTTGATGAACGTCTATGGTTACCACTTCCCATATTGAAAGCTGTAACTGTGATAAAGGATGCTACGATTTCTGCTCTGGAAAAAAAGAAAAAGCCTTTTGATCACTGGTGGTTGCATATGGATGAATTTCTTCACGAATACAACACTGTTCATGAGTTAAAGAGACATCTTACTTGTTCTGGTATTTTATCTGAGGTTGATGGCATTTTTGGTTCTAATGATACTGTGGGTGATACTAATGATAGCAACTTGAGACTAGAATCCCCCTCAAGGAACCATCTTGGCATGCGTAGTGGTTTATTTGCATTGACCAACAAATCAGGATTTCGGATACTAATTTCTGGAGATCCTCGATCTGGCCAGAGACATCTTGCTTCTTGTCTTCTTCACTGCTTTATTGGAAATATTGAAATACAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGAAGTGGTGCAGGGGATTGCACAAATATTAATGAAATGTGCTAGCAGGCAATCTTGCGTAGTATTCTTGCCAAAAATTGATTTATGGGCTCTGGAGAAACATTTTCAAATCTCTGAAAGGACTGATTCGTGTTTAAAGAGAGGCAAGTCCTACTTCACACCAAACCAAGTTGTTGTGAAGGAAAGAGAGATCAATAATGAGAAAAACTCAACTGAGATGGCGAATGGCCAAGCCATCACAAAGGCTTCATTTGCTTGGATGTCATTTGTTGAGCAGGTGGAATCCATTGGTGTATCCACATCCTTGATGATTCTGGCTACTTCGGAAGTTCCCTACATAGAACTTCCTTGCAAAGTAAGAGAATTCTTCAAGAGTTATCAATCTAGAGACAGCCAGTCAACTCCATTGGAGCATACAGTTCCTCGTTTCTCTGTGCAGATTGATGGGAATTTTGACCATGACATGGTGATCAATTTATCTGCACTAGAGCTATTGAGAAATGTAGTTAAGCAGCTGGTTCAATTGATTCATCAGAGATCTCATGCTCATACAGGTAGCCAAAAGGGCCACAGAACCTGTGAATCAATTGAAATTTGTAAAAAAAAGGTATGTCAAAGAAAAGATGGATCAGATAAAAAGAGTGAAATCCAACTCGAGTCCTTTACAAAAGTTTCACCAACACCAACCAGCAAGTCATTGAAGGGAAAGTCAACCCTGTTGTTGGCAATATCTACACTTGGTTATCAAATTCTCTTATACCCTCACTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCAAAGAAGGTCCTTGTGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCTTGTATAATTCGTCCTAATAATTCACACGACAAGGTTGTAGTTTCTTGTAATTCTGGTAGCATTAAAAGCAGAGAAGCATCTGGTCTAGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATAGATCAGTTAGGGAAGTTTCCCTGGATGTAAGGAAGGTTCTTGAGGTCTTAATTGAGAAAATCAATACCAAAATTCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTATCTCAAGTGGCTTATTTAGAAGACATGGTCAACAACTGGGCTTACTCATTGCTAAGTCTGGAGCAGGATTCCCATGAGCATACAACAAAGGTTACACCAGCAAGTGGTGGGTTATTAAACAGTCATCATATTAGTGAAAAACGCCAAGCAGAAGGCGAGGACTGCCATGTTTCTGTTGCTGGAGATGGTCATGATTTGAAGACATTGGAGGAAAGTCATAACGGAATTCCTGCTGAAATGGCGGGGTGTATTGCCTCTAACCAAAATGGTAATTTAGATATTGATTGTGATGATGGAAATGCTAGTTCTGAAGGATCTCTACAGAACCATTATTTTTCTGAAAAGCATATCAACAACTCTGCTGATGCTGCTATGATTGCAAACCAACCTCTTTATCCGGCTACAAGTCAGGAGAATGGAACACTATTAGTACAACATGAATCTCGGACGGCTAGAAATAATGAAGAGGTGCGTGAAAAACTAGGGATTTCAAATAACTTCAGCAAATCCATGGGCACTCAAACTGTGGTTCTTTCTGCAAACGGAGTTCACACTACTTTGGAACCAGAGAAACAGAATATTGAGATTGGTAACGGTGCTGTCTCTGATCAGCCTCTTATTGTGTCCTCATCCTCGCAAGACACTGGTGCAACATTAAGTGATATCAAATCTGACAAACATGATAATGCTACAGACAATGATGCCTCTTCAAGTAATGGTAGTGTTCCTGCTGAATCGGGGGTTATATGCTTGTATCAATGTTGCCCTGGATGTCTCCACAGTCTCTATCATTTGACAAAGAAAATGCTTCTTAGAGAGTGGGGGATGAACGGTGACCAGTGGAGTATAGAAGATGTTCATGATGCTGTTGCAACATTATCTGTGGATCTTATTTCAGCAGTTAGAAAAAGCTTTGTGGCTGAAGATTTCAATGCTTCATCAAATAAAACCTCAAGGCATGAAAATCATGAAACATCTCTTGATTGTTGGAACCAGAGAACGTGTAATGCTGAAAACCAAGGCAAGGATTTAGTGCCTGTCGAATGTATTTTTCACTCTGCAAGCGAACATGCAACTGCAATTGAAGATAAGGCACTGAATGATCTTAATTTTGTTTTCAGAGATGGTGTACTTGTTCATATGGACCCTGACAAGGATGTCTCAGTTCACTGTAAATTTCAGAACTTGTGCCTTTGTTCTCTTAGAGAGTTGATAATAATGACAAAGCGACCTTTTGATTAG 5532 0.4297 MRSSPSSLGSSSRSGLRLRKKHKRLDAICEEEYTRNHGELNDDNDGLNPDAGVRRSSRVRRAPVLLDASPAPPKKRRRLRKGGFDRGGESPMSLERENRGSGGSWSSRLRSRVGNVSFRVKEEGESPRGKRKLFESVVGKKGDDEVGKKEELEGLMPKVVKSKRPGRIKATKHDEGHEDDVSHGSLEGSKSQEVVLLSSSDEESDSESETELSGEDQMYESDGNAPSMVGNEDGDQMTDSDGSVPLMVENEERNLSNDLQMKECGDDIESSSQVEREDKVDYQLEGAKESESVGNAAEQVDNEGFVGKEVDDGGNFLKDANVDKEDDVNENVLKGVSAGRNDELKHASNDKRGHLRIKEGRRCGLCGGGSDGKPPKRLAHDNGESENEAYSGSSSSEETNYDIWDGFDDEPGWLGRLLGPINDYHGITRIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGSKYLARIKKLKARKMMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLQRDLLRIAPVYIGGSDSACENSFQGWESVAGLRDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPLRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPESVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSLAAQEKHSGSKPIPLPSFAVEERDWLEAVFSSPLPCSRRDAGNAANDVVCSPLPIQLTPCLLQPLCTLLVSLHLDERLWLPLPILKAVTVIKDATISALEKKKKPFDHWWLHMDEFLHEYNTVHELKRHLTCSGILSEVDGIFGSNDTVGDTNDSNLRLESPSRNHLGMRSGLFALTNKSGFRILISGDPRSGQRHLASCLLHCFIGNIEIQKIDMATILQEGHGEVVQGIAQILMKCASRQSCVVFLPKIDLWALEKHFQISERTDSCLKRGKSYFTPNQVVVKEREINNEKNSTEMANGQAITKASFAWMSFVEQVESIGVSTSLMILATSEVPYIELPCKVREFFKSYQSRDSQSTPLEHTVPRFSVQIDGNFDHDMVINLSALELLRNVVKQLVQLIHQRSHAHTGSQKGHRTCESIEICKKKVCQRKDGSDKKSEIQLESFTKVSPTPTSKSLKGKSTLLLAISTLGYQILLYPHFAELCWVTSKLKEGPCADVSGPWRGWPFNSCIIRPNNSHDKVVVSCNSGSIKSREASGLVRGLIAVGLSAYRGVYRSVREVSLDVRKVLEVLIEKINTKIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSHEHTTKVTPASGGLLNSHHISEKRQAEGEDCHVSVAGDGHDLKTLEESHNGIPAEMAGCIASNQNGNLDIDCDDGNASSEGSLQNHYFSEKHINNSADAAMIANQPLYPATSQENGTLLVQHESRTARNNEEVREKLGISNNFSKSMGTQTVVLSANGVHTTLEPEKQNIEIGNGAVSDQPLIVSSSSQDTGATLSDIKSDKHDNATDNDASSSNGSVPAESGVICLYQCCPGCLHSLYHLTKKMLLREWGMNGDQWSIEDVHDAVATLSVDLISAVRKSFVAEDFNASSNKTSRHENHETSLDCWNQRTCNAENQGKDLVPVECIFHSASEHATAIEDKALNDLNFVFRDGVLVHMDPDKDVSVHCKFQNLCLCSLRELIIMTKRPFD 1843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 97 113 - -
Vium2494g00006 1843 ProSitePatterns AAA-protein family signature. 743 761 IPR003960 GO:0005524|GO:0016887
Vium2494g00006 1843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 831 IPR027417 -
Vium2494g00006 1843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 514 IPR013083 -
Vium2494g00006 1843 Gene3D - 774 844 - -
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 255 277 - -
Vium2494g00006 1843 Pfam AAA+ lid domain 799 831 IPR041569 -
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 366 398 - -
Vium2494g00006 1843 Coils Coil 557 577 - -
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 168 186 - -
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 1 277 - -
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 1639 1672 - -
Vium2494g00006 1843 SMART AAA_5 634 775 IPR003593 GO:0016887
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 23 44 - -
Vium2494g00006 1843 FunFam ATPase family, AAA domain-containing 2 597 780 - -
Vium2494g00006 1843 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 358 514 - -
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 200 216 - -
Vium2494g00006 1843 ProSiteProfiles Extended PHD (ePHD) domain profile. 400 512 IPR034732 -
Vium2494g00006 1843 PANTHER AAA DOMAIN-CONTAINING 13 1747 IPR045199 -
Vium2494g00006 1843 MobiDBLite consensus disorder prediction 115 160 - -
Vium2494g00006 1843 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 774 867 - -
Vium2494g00006 1843 Pfam PHD-like zinc-binding domain 433 512 - -
Vium2494g00006 1843 Gene3D - 599 773 IPR027417 -
Vium2494g00006 1843 Pfam ATPase family associated with various cellular activities (AAA) 638 773 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2494g00006 Vium-Chr2494 106656 114095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2494g00006 600 835 Calmodulin-binding Proteins AT3G56690 40.756 4.70e-45 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2494g00006 - - gmx:100803849 2820.03