Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2493g00011 ATGGCTTCCTTAACCCTCCTTATACCAACACTTATTTGTCTTCAATTTCATTTTCTTTCATTCGCTTTTGCAGAAGTTGATATCGGTTCCACAATTTCCACCGACAACAATGGAGTGTGGCGTTCCCCTTCGGGTCATTTTGCTTTGGGGTTTCGTGCATTGAATAATAACAGGGATCCGAATACAAAGCTGTTCATGGTTGCCATATGGTACGACATGATACCCGACAAGACCGTTGTTTGGAGTTTAAAAACAGAAAAAAAAAAACTTGTAGCAGCACCAGCGGGATCACAGTTTCGGATTTCTCCGGCGGGGCTAATACTGGCGGGTCCCGAAGGAGATTCCATATGGCAATCATACCTGTCAAGTGTTGTCTCCGTAGGTTCTATGCTTGATACTGGCAACTTTGTTCTATGGACTGGGAACTCTGAAAAGGTGTGGCAAAGTTTTAATTACCCCACCGACACGTTGTTGCCTACCCAATCTCTCCAACATGAAGGCACGCTAACATCTCGATTAACAGACACTAATTACACTACTGGAAGGTTCCAACTTTATTTTAAGGAGGGTAATGTCGTACTGAGTCCTCTTGGATGGCCTTCTCAACTGCTTTACGACCCTTACTATGTGTTGAATGCCTCTGGTGCTGCTTCAACGTTACTGTTCAATGAGTCGGGGAATATCTACGTAAGCACCACAGTTGGGACTATAATCCAACCTCAAGGTCCCCAATGGAATATCTTGGATCTCGATCCTGAGGTGAATTACTACAGAGCAAGGCTCGACTCCACTGGAGTTTTCACCCAGTATTATCATCCACGGAACAACACTTCTCAGTCAGGGTGGAGAATCATGAGGTTTGTTCCTGACAACATTTGCAATGCAACAATTTATCAGTATGGTAGCGGTTCCTGTGGCTACAATAGCTACTGCTCCATGGAAAATCAGAGGCCTACCTGCAAATGCCCTTATGGGTATTCGCTGCTGGATCCGAGTAATCAACTTGGTGGATGCCAACCAAATTTCACCCTTGCTTGTGGAGCTGATGTTCAAACACCGCCAGAAGAACTATATGAAATGCATGTATCTCTAGATTTTAATTTTCCTGGGGTGGACTATGAAAGGATACAACCTTACTCTAGGCAGGACTGCCAGCGGTTTTGCCTGCAGGATTGCAGGTGTGCTATGGCCATTGCAGGACGCGATACTTGTTGGCTGAAGAGATTTCCCCTTGGTAACGGTAGACAAATAAACGTCACAGATCATCATGTTGTGTATATCAAAACAAGAGTTGTTCGCGACTTTTATACAGGTGCAAACGGGGAACCTTCTCCTCTCCCGGATTCAAAGATAGAACATGAAGCTAAGCTGTTTCTTTTGGGGCCGCTAATTGGTTCTCTTGTCCTAAACAGTATTCTCTTTGCTACAGTTGCTTTGTTTATTCTCAAGATTCAGAAAGTGAATAGGGTTTCCAAAGCCGCCCCTAGTCCTTTGGAAACGAATTTGCATTCGTTTACTTATGAAAATTTGAAAAAGGCCACAGAGAATTTTCAGGAGGAAATAGGCAGAGGTTCTTTTGGCATTGTTTACAAAGGACAACTAGAAGCAGGTTCTTGTCATGTGATTGCTGTGAAGAGATTGGACAGATTGGTAGACGAACGAGAGAAAGAATTTAGGACTGAATTGAGTTCCATCGGTAGAACCTGCCACAAAAATCTGGTCAGGTTAATCGGATTTTGTGACGAGGGAATCAATAGAATAATGGTGTACGAGTTCATGAGCAACGGCAGTCTTGCAGACATCCTGTTTGGGAAATCCAAACCCAGATGGAATGTAAGAGTTGGATTTGCTTTGGGGATTGCAAGAGGATTGGTATACTTGCACGAAGAGTGTGAGACTCCCATTATTCATTGTGATATAAAACCTCAAAATATACTGATAGACGAGTATTTCAATCCAAAGATATCAGACTTTGGGTTGGCCAAGTTGTTGCTGTCTGAGCAAAGTAGAACGATCACAATGATCCGAGGAACACGAGGATACGTGGCTCCTGAATGGTTTAAGAATGTTGCTGTGACGGTTAAAGTGGATGTTTACAGCTTTGGTGTAATGCTGTTAGAAATAATTTGCAGCAGAAGAAGTGTGTTAACGATGGAGCCTGGGGAAGAAGAGGAAGAAGAGAAGGCAGTGCTAACAGATTGGGCTTGTGATTGCTTTGTGGAAGGGAGAATAGATGTTCTTGTGGAGAATGATGAAGAGGCCTTATCTGACTATGTGAGGCTACAAAAATGGGTGAAAATTGCAATATGGTGCATTCATGAGCAACCTCAGATGAGACCGACAATGGGGATTGTCATGCAAATGCTCGAAGGCTTGGTTGAAGTTCCTAACCCACCATCTCTCATGCGTAGTTGA 2415 0.4352 MASLTLLIPTLICLQFHFLSFAFAEVDIGSTISTDNNGVWRSPSGHFALGFRALNNNRDPNTKLFMVAIWYDMIPDKTVVWSLKTEKKKLVAAPAGSQFRISPAGLILAGPEGDSIWQSYLSSVVSVGSMLDTGNFVLWTGNSEKVWQSFNYPTDTLLPTQSLQHEGTLTSRLTDTNYTTGRFQLYFKEGNVVLSPLGWPSQLLYDPYYVLNASGAASTLLFNESGNIYVSTTVGTIIQPQGPQWNILDLDPEVNYYRARLDSTGVFTQYYHPRNNTSQSGWRIMRFVPDNICNATIYQYGSGSCGYNSYCSMENQRPTCKCPYGYSLLDPSNQLGGCQPNFTLACGADVQTPPEELYEMHVSLDFNFPGVDYERIQPYSRQDCQRFCLQDCRCAMAIAGRDTCWLKRFPLGNGRQINVTDHHVVYIKTRVVRDFYTGANGEPSPLPDSKIEHEAKLFLLGPLIGSLVLNSILFATVALFILKIQKVNRVSKAAPSPLETNLHSFTYENLKKATENFQEEIGRGSFGIVYKGQLEAGSCHVIAVKRLDRLVDEREKEFRTELSSIGRTCHKNLVRLIGFCDEGINRIMVYEFMSNGSLADILFGKSKPRWNVRVGFALGIARGLVYLHEECETPIIHCDIKPQNILIDEYFNPKISDFGLAKLLLSEQSRTITMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICSRRSVLTMEPGEEEEEEKAVLTDWACDCFVEGRIDVLVENDEEALSDYVRLQKWVKIAIWCIHEQPQMRPTMGIVMQMLEGLVEVPNPPSLMRS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2493g00011 804 SMART blect_4 29 153 IPR001480 -
Vium2493g00011 804 Gene3D - 154 283 IPR036426 -
Vium2493g00011 804 PIRSF SRK 1 804 IPR024171 GO:0004674
Vium2493g00011 804 Gene3D - 26 152 IPR036426 -
Vium2493g00011 804 SMART serkin_6 515 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2493g00011 804 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 797 - -
Vium2493g00011 804 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Vium2493g00011 804 FunFam S-receptor-like serine/threonine-protein kinase 484 592 - -
Vium2493g00011 804 ProSitePatterns Protein kinases ATP-binding region signature. 521 545 IPR017441 GO:0005524
Vium2493g00011 804 Gene3D Phosphorylase Kinase; domain 1 480 592 - -
Vium2493g00011 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 155 IPR036426 -
Vium2493g00011 804 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 800 - -
Vium2493g00011 804 Gene3D Transferase(Phosphotransferase) domain 1 593 797 - -
Vium2493g00011 804 Pfam D-mannose binding lectin 78 166 IPR001480 -
Vium2493g00011 804 SUPERFAMILY Protein kinase-like (PK-like) 495 790 IPR011009 -
Vium2493g00011 804 ProSiteProfiles Protein kinase domain profile. 515 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2493g00011 804 CDD STKc_IRAK 521 792 - -
Vium2493g00011 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vium2493g00011 804 Pfam Protein kinase domain 518 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2493g00011 Vium-Chr2493 31586 34138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2493g00011 501 791 Receptor kinase-like Gene Family AT1G60800 41.275 6.44e-66 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium2493g00011 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2493g00011 - - gmx:100789263 1100.5