Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2493g00001 ATGAATATCCTGATTTGGGCATTTAAATTCTGTTTTTTAATTCAAAATTGTTTATCCAGCCGAATGCTTCTGCAGAAGAGAGTGTTCTTTCACTCACACAGAGTCCAGCCTATGGCACCAGAACAAGTGTTGTCAGACCGTGACAGTGAAGATGAAGTTGACGATGACATTGCAGATCTTGAAGATAGAAGGATGCTTGATGATTTTGTGGATGTTTCCAAAGATGAAAAACAACTCATGCATCTCTGGAACTCCTTTATGAGGAAGCAAAGGGTGCTGGCGGATGGTCATGTGCCGTGGGCCTGTGAGGCATTTTCCAAGCTTCATGGAAAAAAGCTGGTCACATCTCCAACTTTATTCTGCAGGTGTTGGAGGTTGTTCATGATTAAACTTTGGAATCATGGTCTTCTTGATGCCTGCACAATGAACAACTGTAACAGAACATTAGATAGTTACAGAAACGAGGGATTGGGTACTAGCAAATAA 486 0.4136 MNILIWAFKFCFLIQNCLSSRMLLQKRVFFHSHRVQPMAPEQVLSDRDSEDEVDDDIADLEDRRMLDDFVDVSKDEKQLMHLWNSFMRKQRVLADGHVPWACEAFSKLHGKKLVTSPTLFCRCWRLFMIKLWNHGLLDACTMNNCNRTLDSYRNEGLGTSK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2493g00001 161 CDD VEFS-box_EMF2-like 24 152 - -
Vium2493g00001 161 Pfam VEFS-Box of polycomb protein 20 147 IPR019135 -
Vium2493g00001 161 PANTHER POLYCOMB GROUP PROTEIN 20 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2493g00001 Vium-Chr2493 12 2375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2493g00001 18 150 C2H2 Transcription Factor Family AT5G51230 78.195 6.98e-59 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2493g00001 - - vum:124830748 315.849