Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium2486g00016 | ATGACGATGGAAGATGAGTCCTTGGCAACAGTCCCATTTGACAGGGCTATTGAACAGGCAATTGTGTCAATAAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGGGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCCCAGGATGAGAGAAATTTGATTTGGTATTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACAAAAATTGTTCAAGGGCAAGAAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAGGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTCATCTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGTAAAGGTGTGCAGAGTTGTGTTAGTAGCCCTGCTGGGATCTTACGAAGAAAGAAAAATCTTGGCCTTTTGGATGATACCTCTCAGTTTACTCAGGTACATAGTTTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGCACTTCTGATAACCTATATTCATCGACATCTTTCCTCTCCAGCGCTCATGGTGTAACGGAAAATTCAGTGCCAAGTTCTCCATACATTGATCCAGAGGTTCATAGTAACATTGAATCAATTCGAATTGATAAGGAGCACAAAAAGAATTTGTCCTATAGGCATTTGACGCATTCTACCTCCGTACATTTAGGAAAAAGTAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGAGTGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAAGGTGGGGTCTATTCTTTAGTGCCGAAGTTACTAGAATCAACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTTTGTTGGGGTCAAGGAAAGTGGGGAAGACTCGGGCAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTGGATTCTCTTAATGGTCTTCATGTAAAGCACGTTGCTTGTGGTGAATATCATACATGTGCTCTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGCTGTGCAGATTTATTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCACAAAATCTTGGCGGATCCTTAGATGGTATAAGTATCTCGAGTATTGCTTGTGGAGAATGGCATACTGCGATTGTCTCTAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTCGAGTCTCTTAGTGGACTAAGGGTGAGGTCTGTTGCATGTGGATCATGGCATACATCTGCTATTGTTGAAGTTATGATTGACCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAGGGGAGGCTTGGTCATTCCGATAACGGAAGCAAGCTTGTACCAACATGTGTTACACAACTTGTCGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAACATGGACAGTTAGGAAATCCACATGCCAAGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTTATATCAACCGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTTTATACATGGGGCAGGGGTGAAAGTGGCCAACTAGGGTTAGGTGATACTGAAGATAGATATACACCTTGTGTGGTTGAGGCTCTGAGAGATAGACAGGTAAATACTATCACTTGCGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTAGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCAATAATGGCATCTAAGTCCAGAAATTACAACAGTCAACAGTTGTTGAAGCATCAACAAAAAATTGTTGATGTCACTGAAGACCGGGGAGAGACAACCGTGACACAAGGTCCTCTGATATCTTTTGGTCAATCATGTTACAGGAAAAGTATGCCAAGTGGACGTAAGGATTGGAAAAACCACCCAGAAAGCCAACAGGATGTACAAGATAGTTCTTCTATGCTAGGTGGAATGCCGCAGTGGGGGCAAGTTCCATGTCCTCCCATATTTAAAATTAATGAGACAGATACAACTAAATCTGAGAAGATGCTGCTTGAAGAAGTTCAAAGGCTGAGAACCGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTTAAAAATCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAATGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGAAAAGATAACGCCGGGCAAGAAGCAAAAGTTGGACAACATGAATTTGTGCCTAATCTGGCAACCATAGTTACAGATATGAAGAGTCCAAGAGATTACAGTGGGGACAGTCTATCCAATTCTCCTATTGTATTCTCTAACACAATAAAATCCAAATTAGGGAGAAGCATGTTTCCCAAAAATGAAAATTCTAACTTTAGTAGTGGTGAGTCTCAACAAGACAATATCAATGGATTGAAGGCTGACTGGGTAGAACAATATGAGCCAGGTGTTTACATCACATTTACAACCTTACCATGTGGGAAAAAAGGCCTCAAGCGAGTGAGATTTAGTCGCAAGCGATTCTCAGAGAAGGAAGCGGAAAAATGGTGGGAAGAGAATCAGAGCACGGTGTATCACAAGTATGGGATTGAAGGATATATAAACACGAGCCAAAGTCAGGTGAAAGGCTAA | 3111 | 0.4137 | MTMEDESLATVPFDRAIEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSLCASPTLSLSERCFSDGLSCTSDNLYSSTSFLSSAHGVTENSVPSSPYIDPEVHSNIESIRIDKEHKKNLSYRHLTHSTSVHLGKSNVLKDVMIWGGGIECLVGIVNERFVQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVACGEYHTCALTDSGEVYTWGNDVCCADLFNEGRTRSQWIPQNLGGSLDGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSVACGSWHTSAIVEVMIDRFRYNSASGKLFTWGDGDEGRLGHSDNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKHGQLGNPHAKDKAVMVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGESGQLGLGDTEDRYTPCVVEALRDRQVNTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSIMASKSRNYNSQQLLKHQQKIVDVTEDRGETTVTQGPLISFGQSCYRKSMPSGRKDWKNHPESQQDVQDSSSMLGGMPQWGQVPCPPIFKINETDTTKSEKMLLEEVQRLRTEAKRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNAGQEAKVGQHEFVPNLATIVTDMKSPRDYSGDSLSNSPIVFSNTIKSKLGRSMFPKNENSNFSSGESQQDNINGLKADWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQSTVYHKYGIEGYINTSQSQVKG | 1036 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium2486g00016 | 1036 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 652 | 714 | IPR017455 | - | |
| Vium2486g00016 | 1036 | SMART | fyve_4 | 646 | 715 | IPR000306 | GO:0046872 | |
| Vium2486g00016 | 1036 | MobiDBLite | consensus disorder prediction | 770 | 794 | - | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 375 | 429 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 967 | 1021 | IPR013591 | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 265 | 322 | IPR000408 | - | |
| Vium2486g00016 | 1036 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 61 | 882 | - | - | |
| Vium2486g00016 | 1036 | PRINTS | Chromosome condensation regulator RCC1 signature | 325 | 341 | IPR000408 | - | |
| Vium2486g00016 | 1036 | PRINTS | Chromosome condensation regulator RCC1 signature | 591 | 612 | IPR000408 | - | |
| Vium2486g00016 | 1036 | PRINTS | Chromosome condensation regulator RCC1 signature | 432 | 446 | IPR000408 | - | |
| Vium2486g00016 | 1036 | PRINTS | Chromosome condensation regulator RCC1 signature | 534 | 552 | IPR000408 | - | |
| Vium2486g00016 | 1036 | PRINTS | Chromosome condensation regulator RCC1 signature | 375 | 391 | IPR000408 | - | |
| Vium2486g00016 | 1036 | PRINTS | Chromosome condensation regulator RCC1 signature | 306 | 319 | IPR000408 | - | |
| Vium2486g00016 | 1036 | PRINTS | Chromosome condensation regulator RCC1 signature | 416 | 432 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 492 | 541 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 596 | 644 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 430 | 478 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 323 | 371 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Pfam | Pleckstrin homology domain | 18 | 124 | IPR001849 | - | |
| Vium2486g00016 | 1036 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 654 | 724 | IPR013083 | - | |
| Vium2486g00016 | 1036 | SUPERFAMILY | FYVE/PHD zinc finger | 653 | 726 | IPR011011 | - | |
| Vium2486g00016 | 1036 | Gene3D | - | 488 | 653 | IPR009091 | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 430 | 481 | IPR000408 | - | |
| Vium2486g00016 | 1036 | CDD | PH_PLC_plant-like | 15 | 127 | - | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 596 | 647 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Gene3D | - | 16 | 133 | IPR011993 | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 323 | 374 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Coils | Coil | 819 | 853 | - | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 545 | 595 | IPR000408 | - | |
| Vium2486g00016 | 1036 | SUPERFAMILY | RCC1/BLIP-II | 265 | 648 | IPR009091 | - | |
| Vium2486g00016 | 1036 | SUPERFAMILY | PH domain-like | 16 | 126 | - | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | BRX domain profile. | 967 | 1022 | IPR013591 | - | |
| Vium2486g00016 | 1036 | Gene3D | - | 387 | 482 | IPR009091 | - | |
| Vium2486g00016 | 1036 | Gene3D | - | 231 | 386 | IPR009091 | - | |
| Vium2486g00016 | 1036 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 493 | 544 | IPR000408 | - | |
| Vium2486g00016 | 1036 | Pfam | FYVE zinc finger | 654 | 712 | IPR000306 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium2486g00016 | Vium-Chr2486 | 164913 | 175372 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium2486g00016 | 968 | 1026 | Major Intrinsic Protein MIP | AT1G31880 | 44.068 | 7.10e-12 | 66.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium2486g00016 | - | - | gmx:100797223 | 1897.48 |