Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2486g00014 ATGATTTGCATCACTTTGCCATCGCTTGTATCAGCAGCAGCAACAACAACCAAACGCAAATCAATGTCAAAACTAACCGTTCTCTTGTTTCTTCTATTCGCATTCTTCAATTCTTCAACAGTCACCACTTTATACTCTCCTTCACCTCCCGCCGCGCCATTTTCCCAATCTACCCCTGACCCCGACTCCTCTCCACCGGCAGAGTGGCTCTTCGCCCATGCCACGCACTACGCCGCCACCGATGCTCTTGGCGGCGCGTGCGGCTACGGTGACCTTCCCAACGGCATGGCCACCGCTGCACTCAGCGAAGCCCTCTTCAACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACGCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTGCCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGAGAGCCTCAGCGGACACTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCACCGAAGTTTTCGAGAAAATCGCAATCTGGAAAACTGGCACCGGCAACATGCCAGTGCAGTATCGCAGGATAGAGTGCAGAAGAGAAGGAGGAATGCGGTTCACATTGAGTGGTTCTGGAATCTTCATTTCGGCACTGATTAGTAATGTAGGTGGGATGGGAAACATTGTGGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTTCAATGGGTAGGAACTGGGGTCAGAACTGGCATGTTAATGCTTTACTGCAGAATCAACCTCTCTCTTTTGAGGTCACTGGTAGCGATGGAATCACTGTTACATCTTACAATGTTGCTCCCAAGGATTGGACTTTTGGACAATCTTTTGAAGGAAAACAATTTCGCCTGAACAGATAA 897 0.5273 MICITLPSLVSAAATTTKRKSMSKLTVLLFLLFAFFNSSTVTTLYSPSPPAAPFSQSTPDPDSSPPAEWLFAHATHYAATDALGGACGYGDLPNGMATAALSEALFNRGQICGACFELRCREEDADFDRRWCISGASVAVTATNFCAPNYGSDAESLSGHCNPPKQHFVLPTEVFEKIAIWKTGTGNMPVQYRRIECRREGGMRFTLSGSGIFISALISNVGGMGNIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFEVTGSDGITVTSYNVAPKDWTFGQSFEGKQFRLNR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2486g00014 298 PRINTS Expansin/Lol pI family signature 68 83 IPR007118 GO:0005576
Vium2486g00014 298 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Vium2486g00014 298 PRINTS Expansin/Lol pI family signature 185 201 IPR007118 GO:0005576
Vium2486g00014 298 PRINTS Expansin/Lol pI family signature 277 291 IPR007118 GO:0005576
Vium2486g00014 298 Gene3D - 54 198 IPR036908 -
Vium2486g00014 298 PRINTS Expansin signature 158 175 IPR002963 GO:0009664
Vium2486g00014 298 PRINTS Expansin signature 277 293 IPR002963 GO:0009664
Vium2486g00014 298 PRINTS Expansin signature 93 107 IPR002963 GO:0009664
Vium2486g00014 298 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Vium2486g00014 298 PRINTS Expansin signature 201 213 IPR002963 GO:0009664
Vium2486g00014 298 PRINTS Expansin signature 248 269 IPR002963 GO:0009664
Vium2486g00014 298 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 202 IPR007112 -
Vium2486g00014 298 SUPERFAMILY PHL pollen allergen 199 291 IPR036749 -
Vium2486g00014 298 Gene3D - 203 294 IPR036749 -
Vium2486g00014 298 CDD DPBB_EXPA_N 68 197 - -
Vium2486g00014 298 PANTHER EXPANSIN-A15 28 294 IPR002963 GO:0009664
Vium2486g00014 298 Pfam Lytic transglycolase 98 192 IPR009009 -
Vium2486g00014 298 Pfam Expansin C-terminal domain 203 280 IPR007117 -
Vium2486g00014 298 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 212 291 IPR007117 -
Vium2486g00014 298 SMART dpbb_1 98 192 IPR007112 -
Vium2486g00014 298 SUPERFAMILY Barwin-like endoglucanases 68 220 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2486g00014 Vium-Chr2486 144963 146278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2486g00014 68 295 Expansin Gene Family AT3G03220 69.231 9.73e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2486g00014 - - gmx:100790211 444.121