Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2486g00012 ATGGCGATTCGCGATCAGAAAGGATTTAACAGATCACAGGATGATCCTTCAGTAGGAAGTGGTGTATCTTTGAGTTCTGGAGTGCATTCCGCTCCACATATTCAACTTAATGACCAGTTTTCCTGTGGGAGTGACTACGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCCAAGGTTCTTCGCGACCCTACTGGGAATGTTACAAATAGAGCGGAATCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAACTAGTTGAGACTCCTAATAAAGAAACTTCAATCCCAGAACAACTTAAGAAGTCTGGTTCTCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGCTGGTTCAGACATCCTTAGCTCCTCAGATTCAGACACACCAAATGAAAGTATGTCCCCCGTGTCATCCATCAGCGACATCCATACAACATCCGAAGAAGCTGGGATAAACGCTGATTCTTCTCATGATGAGAAGTCTCTTATGAAATTAAAGCTTCCTACAAAGGAAAGTGTTTTCATCAAAGAAGAATCTTCCGGGCAGACTTTGAAACTCTTTGGGATTACACTTTTTGTAACAGATACATGCAAACCCTCTTCTCCAAGAACTGAAGCATGCAAACCAATACCTCTAAACATATGCAAGGGGGATGGAAGATTGGAACTTATTGGGCACATCACACCCAGTGAAACATCAGCCATATCCCTACTAAAGATGAGAGAGGGTCCTGAAACATGTGATGGAAAAGGGTTTGTGCCATATCGAAGGTGCATGGCAGGGAGAGAAAACCAGTCTTCATCTGTGACAAATGATAATAGAGAAGAGCAATGCATCCACCTTTCGTTGTAG 1047 0.425 MAIRDQKGFNRSQDDPSVGSGVSLSSGVHSAPHIQLNDQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNVTNRAESIEIPPPRPKRKPMHPYPRKLVETPNKETSIPEQLKKSGSLKSSDFDQENQSPKSVLSGAGSDILSSSDSDTPNESMSPVSSISDIHTTSEEAGINADSSHDEKSLMKLKLPTKESVFIKEESSGQTLKLFGITLFVTDTCKPSSPRTEACKPIPLNICKGDGRLELIGHITPSETSAISLLKMREGPETCDGKGFVPYRRCMAGRENQSSSVTNDNREEQCIHLSL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2486g00012 348 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Vium2486g00012 348 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vium2486g00012 348 MobiDBLite consensus disorder prediction 125 143 - -
Vium2486g00012 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Vium2486g00012 348 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Vium2486g00012 348 Gene3D - 62 108 - -
Vium2486g00012 348 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Vium2486g00012 348 SMART sant 59 107 IPR001005 -
Vium2486g00012 348 MobiDBLite consensus disorder prediction 148 203 - -
Vium2486g00012 348 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vium2486g00012 348 MobiDBLite consensus disorder prediction 112 203 - -
Vium2486g00012 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vium2486g00012 348 CDD SANT 62 105 IPR001005 -
Vium2486g00012 348 MobiDBLite consensus disorder prediction 1 28 - -
Vium2486g00012 348 MobiDBLite consensus disorder prediction 12 28 - -
Vium2486g00012 348 PANTHER SWI/SNF COMPLEX-RELATED 44 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2486g00012 Vium-Chr2486 135869 139102 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium2486g00012 Myb_DNA-binding 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2486g00012 - - gmx:780539 505.368