Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2484g00014 ATGGCACATCTGGAAGCTCCTGTTAGAACTGTGTCCACTTCTCAGCCAGAAACAGGTGTGGGAGATGGTGATCTGTACACGCAGCTATGGAAGCTATGTGCGGGGCCTTTGGTGGATGTTCCTTGCGAAGGGGAGAGAGTTTTCTACTTTCCGCAGGGTCACATGGAACAATTGCAAGCTTCGACTAATCAGGGACCGAACCAGGAGCTGAGCCAGCAAATTCCTCATTTCAATCTCCCGTCCAAGATTCTCTGCCGTGTTGTTCACATTCAGTTGTTGGCGGAACAAGAAACAGATGAAGTTTATGCTCGTATCACTTTGCTTCCGCAGTCAAATCAAGAAGAGCCAACGAGTCCAGACCCAAGTCCACCAGAGACCCAGAAACAGAGCTTTCACTCTTTTAGTAAAATATTAACTGCTTCTGATACTAGCACTCACGGAGGATTTTCAGTTCTTCGGAGGCATGCTACCGAGTGTCTGCCTCCATTGGACATGACCCAAACTATCCCCACTCAGGAATTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCCGAGGTCAACCAAGGAGGCACCTGCTCACAACTGGCTGGAGTACATTTGTGACATCCAAGAGACTTGTTGCCGGAGATGCTTTTGTGTTTCTGAGGGGAGAGAATGGCGAACTGAGAGTCGGTGTTAGGCGTGTAGCACGACAGCAAAGTCCCATGCCTTCTTCTGTGATATCAAGTCAGAGTATGCATCTTGGAGTGCTTGCCACCGCCTCTCATGCATTTTTGACCAGTACCATGTTTGTGGTATATTACAAACCTAGGACTAGCCAGTTTATTATCGGTCTAAACAAATATCTGGAGGCAGTGAACAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGATTTTCTGGTACCATTGTTGGGGTTGGGGATGTATCTCCAGGATGGCGGAACTCTCAGTGGCGTTCGTTGAAGGTTCAATGGGATGAACCGGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTCGTTGCTTCCACTGCTTTGAATGTCACTCAACCCGTGGTGAAGAGCAAAAGGTCCAGGCCTGAGGTTTCGTGTTCTGAAATAGGCCCCAACTCCCCTGGTGCGGGTTTGTGGTATCATGGACCATCCTTATCCCATGACCCTACTGCATTGGGTGGCACATCAGAGGTCCAAAGCAATGAAAGCCCAGTAATATGGTGTACAAGGATGAAAGAAATAAATGTGAATCCGATGAATGGTAACAAGAGCAGCTCCAGCAGAGTCCGTGTGGAAGGAATGTGGCCATCTTCCCCACATTTGAGTGTCTCTTCGAACCTTTTTCCGGACCCAAAAAACAGCAAAGCTGTCACAGCACAATCAACTGTCTCCGGGTATGCCCCTGTTTCATCTAGGCCGAATGATGATTTGGCACATGATCCCGTGGAATGTGGTAAAAGAAGTGAGAATCCCATGGACTGTTGGGTGTTTGGAGTTAATTTGACTAACAATTTTACTAACGTTGCCCTCCCTGATAAAGAACTAGGATGTCCACCTACAATAATTCCTAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTCAGCCTGGTCAGAATCACAATTATTCACTGTCCAATAAGCTGCAGAAGCAAATTATTTCTGATGGATCACCCAGTGAGAGACACGCCAAGCAGACCACAGTACCATCCACCAGGACTCGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCTGTTGACCTCACTGTCCTAAAAGATTATGAGGCTCTCGTAGACGAGCTTGAGAAAATTTTTGATATCAAGGGAGAGCTTCGAATGCAAACCAAATGGGTTATTACTTTCACTGATGATGAGAATGACATGATGCTCGCGGGTGATGATCCATGGCCTGAATTCTGTTCTATGGCGAAGAGGATTTTCATTTGTTCAAGGGAAGATGTGAAGAAGTTGAAAAGCAAGCATTCTGGTTGTTCGTCAGAGGGTGAGGAGACTTTGTTGAGTCAAGATTCGCAGAATAGGGAGGAAACTCAGCAGATCTCTTGCGATTTGACAGCTTAA 2151 0.4672 MAHLEAPVRTVSTSQPETGVGDGDLYTQLWKLCAGPLVDVPCEGERVFYFPQGHMEQLQASTNQGPNQELSQQIPHFNLPSKILCRVVHIQLLAEQETDEVYARITLLPQSNQEEPTSPDPSPPETQKQSFHSFSKILTASDTSTHGGFSVLRRHATECLPPLDMTQTIPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGLNKYLEAVNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWRNSQWRSLKVQWDEPAIIPRPERVSSWEIEPFVASTALNVTQPVVKSKRSRPEVSCSEIGPNSPGAGLWYHGPSLSHDPTALGGTSEVQSNESPVIWCTRMKEINVNPMNGNKSSSSRVRVEGMWPSSPHLSVSSNLFPDPKNSKAVTAQSTVSGYAPVSSRPNDDLAHDPVECGKRSENPMDCWVFGVNLTNNFTNVALPDKELGCPPTIIPSGPKDSIPVAACETQPGQNHNYSLSNKLQKQIISDGSPSERHAKQTTVPSTRTRTKVQMQGVAVGRAVDLTVLKDYEALVDELEKIFDIKGELRMQTKWVITFTDDENDMMLAGDDPWPEFCSMAKRIFICSREDVKKLKSKHSGCSSEGEETLLSQDSQNREETQQISCDLTA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2484g00014 716 MobiDBLite consensus disorder prediction 464 488 - -
Vium2484g00014 716 Pfam AUX/IAA family 638 678 IPR033389 -
Vium2484g00014 716 Pfam AUX/IAA family 582 630 IPR033389 -
Vium2484g00014 716 MobiDBLite consensus disorder prediction 464 498 - -
Vium2484g00014 716 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Vium2484g00014 716 Gene3D - 590 682 - -
Vium2484g00014 716 MobiDBLite consensus disorder prediction 1 20 - -
Vium2484g00014 716 MobiDBLite consensus disorder prediction 576 595 - -
Vium2484g00014 716 Gene3D - 294 366 - -
Vium2484g00014 716 Gene3D - 131 235 IPR015300 -
Vium2484g00014 716 MobiDBLite consensus disorder prediction 690 716 - -
Vium2484g00014 716 Pfam Auxin response factor 260 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium2484g00014 716 FunFam Auxin response factor 294 365 - -
Vium2484g00014 716 ProSiteProfiles PB1 domain profile. 594 675 IPR000270 GO:0005515
Vium2484g00014 716 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Vium2484g00014 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium2484g00014 716 CDD B3_DNA 132 234 IPR003340 GO:0003677
Vium2484g00014 716 MobiDBLite consensus disorder prediction 683 716 - -
Vium2484g00014 716 FunFam Auxin response factor 132 236 - -
Vium2484g00014 716 SUPERFAMILY CAD & PB1 domains 591 670 - -
Vium2484g00014 716 SMART B3_2 134 236 IPR003340 GO:0003677
Vium2484g00014 716 MobiDBLite consensus disorder prediction 110 130 - -
Vium2484g00014 716 SUPERFAMILY DNA-binding pseudobarrel domain 125 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2484g00014 Vium-Chr2484 126969 131939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2484g00014 21 681 B3 DNA Binding Superfamily AT4G23980 56.842 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium2484g00014 B3 3.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2484g00014 K14486 - gmx:100820503 1096.65