Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2484g00009 ATGGCTTTCCATGCTGATGAGGCAAAAACAAGTATGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGAACTTGCTCCGTATTTCCCAACCGACGAGGTTGAGAATTTTGCCGTAGTGCATAGAGTGTTCGGTGCTAGAAACGTTATCAAAATGATTCAGACGGTTGAGGAAGCAAAGAGAGGTGATGCAGTTAAATCCGTGGTGTATGAGGCCACAGCAAGGCTTAGAGATCCAGTTTATGGGAGTGCTGGAGTTATTTATGAGTTACAAAAGATGATCGAGGAACTTAAGGCTCAGTTGGATTCGATAAGAACACGGATGTCAGAGATGAGAGAAGAAAAGGAGCTGTTGTTGAGCATTGGTAACAACTACGATCCTATGTTTGATTCTGCTATGGCCTCAGATCCATTTGAATTTCCTCTGGAAGGTGGCTGCCTATACAGCAATATCTCAACACCCTCCTAG 492 0.4492 MAFHADEAKTSMQHQPCAACRMLRRRCDSKCELAPYFPTDEVENFAVVHRVFGARNVIKMIQTVEEAKRGDAVKSVVYEATARLRDPVYGSAGVIYELQKMIEELKAQLDSIRTRMSEMREEKELLLSIGNNYDPMFDSAMASDPFEFPLEGGCLYSNISTPS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2484g00009 163 Pfam Lateral organ boundaries (LOB) domain 16 112 IPR004883 -
Vium2484g00009 163 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Vium2484g00009 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 121 - -
Vium2484g00009 163 Coils Coil 95 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2484g00009 Vium-Chr2484 79913 84190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2484g00009 16 134 AS2 family AT1G07900 52.941 5.73e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2484g00009 LOB 3.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2484g00009 - - vra:106754025 285.034