Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2484g00008 ATGGGAAGAGCTCCTTGTTGCTCCAAAGTAGGGTTGCACAGAGGTCCATGGACTCCACGAGAAGATGCTTTGCTCACTAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTGCCAAAAAGAGCTGGTCTTCTCAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGACGATCTCATAATTAGAATGCATTCACTTTTAGGAAATCGATGGTCCCTCATTGCTGGAAGGTTACCGGGACGAACAGATAATGAGATAAAGAATTACTGGAATACCCATCTTAGCAAGAAGCTGAGAAATCAAGGAACAGATCCTAAGACACACCACAAGTTAACCGTAACACCGGAGAAGAAGAAGGGCAAAAAGAAGAACAAGCAAAAGCATGAGAATAAGAAAGGGAGCTCTGAGAAAACCTTGGTTTATCTACCAAAAGCCGTGAGGGTTAAGGCTGTGTCATGTGTGCCTCGAACGGAGAGCACCTTCACCCTGGATTCGAATTCGGGTAGTGCATCGACGAGCCAGGAGAAAGTTCAAAGCCCAGAAGAAGTAGCAAGAGAGGTAAACATGGTTTGGGGTGTAGGCAACGAAGGAGACCATGGTGGGGTTGGAATTTTCTTTGGTGAAGACCACGACCTAGTCAACACCTCCTCTTACGTGGAATGTCATTCTGATGATGTTCACACTGATCATGGTACGCTACAAAAGCTCTACGAAGAGTACTTGCAGCTCTTGAAGGATGAAGAGAAACCTGCGGATGAATTAGATTCTTTTGCCCAATCTTTATTGGTGTAG 846 0.448 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHHKLTVTPEKKKGKKKNKQKHENKKGSSEKTLVYLPKAVRVKAVSCVPRTESTFTLDSNSGSASTSQEKVQSPEEVAREVNMVWGVGNEGDHGGVGIFFGEDHDLVNTSSYVECHSDDVHTDHGTLQKLYEEYLQLLKDEEKPADELDSFAQSLLV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2484g00008 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium2484g00008 281 CDD SANT 16 61 IPR001005 -
Vium2484g00008 281 MobiDBLite consensus disorder prediction 130 146 - -
Vium2484g00008 281 FunFam Myb transcription factor 11 67 - -
Vium2484g00008 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium2484g00008 281 MobiDBLite consensus disorder prediction 177 196 - -
Vium2484g00008 281 Gene3D - 14 66 - -
Vium2484g00008 281 MobiDBLite consensus disorder prediction 177 198 - -
Vium2484g00008 281 SMART sant 13 63 IPR001005 -
Vium2484g00008 281 SMART sant 66 114 IPR001005 -
Vium2484g00008 281 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium2484g00008 281 Gene3D - 71 156 - -
Vium2484g00008 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium2484g00008 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium2484g00008 281 FunFam Transcription repressor MYB5 71 156 - -
Vium2484g00008 281 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium2484g00008 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium2484g00008 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 193 - -
Vium2484g00008 281 MobiDBLite consensus disorder prediction 115 155 - -
Vium2484g00008 281 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2484g00008 Vium-Chr2484 71253 72899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2484g00008 4 129 MYB Transcription Factor Family AT3G13540 73.810 1.28e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2484g00008 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2484g00008 K09422 - gmx:778044 459.144