Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2484g00006 ATGGAAGAAATAGGTCCCAATTCATGCGCAAGGCCATCGTCAGAGAAGAAAGCAAAACCACAAGAGCAATTGAATTGTCCAAGGTGCAGTTCAACGAACACAAAGTTCTGCTATTACAACAATTACAGCCTCACACAGCCAAGATATTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGTTCTCTCAGAAACGTCCCCGTTGGAGGTGGCTCCAGGAAGAACAAGAAGGCCACCTTATCAAAGGTTCCTGACTTGAATCCACCAGTCTCGGCTATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGATCTTAATTTGGCTTTTCCTGCAGCTATTGACAAGTATCATGGCATGTCCCCATATGCTGAGATGCCGAAACTTGAAATCGGTGGTGACAATACCAGTCACCACCATAGCCCTTCTTCTGCTCCAACTTCTCTTTCACCGACATATGGCATGTTGCCCAGGGGTTTGAATCCTTATGCTCCTAATTCCTTCATGCCAAACTCAGATTCACTTTACACACCGATCTATCCCATGCAAGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGGGTTTGGAAATAGAGCACACGGGGTTCAAGAGAACGGTGGCGGCGGAAGGCTTTTGTTCCCTTTCGGAGACATCAAGCACCTTTCTGCAGGTGTTGAAGTTGAACACAATAAAGAACAAGGAAATAATCCAACTGGATACTGGACCGGAATCATCGGTGATGGGTCATCATGGTAA 762 0.4501 MEEIGPNSCARPSSEKKAKPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKATLSKVPDLNPPVSAISSQNPKMQGVHDLNLAFPAAIDKYHGMSPYAEMPKLEIGGDNTSHHHSPSSAPTSLSPTYGMLPRGLNPYAPNSFMPNSDSLYTPIYPMQEIKPNLSFSVDGFGNRAHGVQENGGGGRLLFPFGDIKHLSAGVEVEHNKEQGNNPTGYWTGIIGDGSSW 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2484g00006 253 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Vium2484g00006 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 120 IPR045174 GO:0003700|GO:0006355
Vium2484g00006 253 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vium2484g00006 253 MobiDBLite consensus disorder prediction 69 98 - -
Vium2484g00006 253 MobiDBLite consensus disorder prediction 132 154 - -
Vium2484g00006 253 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Vium2484g00006 253 MobiDBLite consensus disorder prediction 137 152 - -
Vium2484g00006 253 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2484g00006 Vium-Chr2484 31723 33489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2484g00006 16 253 C2C2-Dof Transcription Factor Family AT3G61850 48.507 7.44e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2484g00006 zf-Dof 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2484g00006 - - gmx:100775598 409.838