Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2476g00036 ATGGTGAGAAAGAACAGAGGTAACCTTTGGGTGTCGTTGTATCAGTATCTATATAGAAGAGTGGAAGTGAGAGAAGAAGCATTAATTGAGAGATTGAAAATGAACGGATTAAGAAGTGAACGAGCTCCTCTCTTGGAATCCCAGCGTGGCGGACGAGGAAAGAGGGATGGTAGCTCGGAAGATCAAGTCTCAGACCTTGAACACGGTGACGCAGTGCCGGCGGCGAATGTGGGATTCTGTCGAGTGTTTTCACTCGCAAAACCTGAGGCTGGAAAGCTGGTGATCGGTACTGTGGCTCTTCTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCTGGGGATCTCCGGACTCCGGAGGAGAGAGATGAAGCTTTGGATGCTGTTAAGAGCACCATACTAGAAATCTTTCTGATCGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCCTGGCTTTTTTATACTGCCAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCGACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTTTGAGCTTCATGTTTGCAACGTCATGGAAGTTAACGTTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCCGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCTGCTGCATTAGCTTCATCAATTGCGGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACGCGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCAGGGGTTACATGTCCTCTGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCCGAGCCAGGAAGTAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAATCATCCAGTGCTCAAGGGCATTACGTTGAAACTGCATCCTGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGGTAACTTGA 1494 0.4317 MVRKNRGNLWVSLYQYLYRRVEVREEALIERLKMNGLRSERAPLLESQRGGRGKRDGSSEDQVSDLEHGDAVPAANVGFCRVFSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDLRTPEERDEALDAVKSTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEITRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIRGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPEPGSKCPLGDQDGEVELDDVWFAYPSRPNHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKVT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2476g00036 497 Pfam ABC transporter transmembrane region 93 366 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2476g00036 497 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 75 496 IPR039421 -
Vium2476g00036 497 FunFam ABC transporter B family member 25 145 415 - -
Vium2476g00036 497 MobiDBLite consensus disorder prediction 45 65 - -
Vium2476g00036 497 Pfam ABC transporter 436 496 IPR003439 GO:0005524
Vium2476g00036 497 SUPERFAMILY ABC transporter transmembrane region 81 399 IPR036640 GO:0005524|GO:0016020
Vium2476g00036 497 Gene3D ABC transporter type 1, transmembrane domain 70 398 IPR036640 GO:0005524|GO:0016020
Vium2476g00036 497 CDD ABC_6TM_AtABCB27_like 96 392 - -
Vium2476g00036 497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 384 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2476g00036 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 496 IPR027417 -
Vium2476g00036 497 Gene3D - 412 497 IPR027417 -
Vium2476g00036 497 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2476g00036 Vium-Chr2476 174449 180475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2476g00036 95 496 Calmodulin-binding Proteins AT2G36910 27.941 1.38e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2476g00036 - - var:108320153 924.08