Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2476g00035 ATGGTGAGAAAGAACAGAGGTAACCTTTGGGTGTCGTTGTATCAGTATCTATATAGAAGAGTGGAAGTGAGAGAAGAAGCATTAATTGAGAGATTGAAAATGAACGGATTAAGAAGTGAACGAGCTCCTCTCTTGGAATCCCAGCGTGGCGGACGAGGAAAGAGGGATGGTAGCTCGGAAGATCAAGTCTCAGACCTTGAACACGGTGACGCAGTGCCGGCGGCGAATGTGGGATTCTGTCGAGTGTTTTCACTCGCAAAACCTGAGGCTGGAAAGCTGGTGATCGGTACTGTGGCTCTTCTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCTGGGGATCTCCGGACTCCGGAGGAGAGAGATGAAGCTTTGGATGCTGTTAAGAGCACCATACTAGAAATCTTTCTGATCGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCCTGGCTTTTTTATACTGCCAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCGACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTTTGAGCTTCATGTTTGCAACGTCATGGAAGTTAACGTTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCCGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCTGCTGCATTAGCTTCATCAATTGCGGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACGCGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCAGGGGTTACATGTCCTCTGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCCGAGCCAGGAAGTAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAATCATCCAGTGCTCAAGGGCATTACGTTGAAACTGCATCCTGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACCCTGTTGATTTAGAGAATGCTTCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAGAAATATCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCCGGTGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTTCTTATGAACCCAAAAATTCTCCTCTTGGATGAAGCTACTAGTGCCCTAGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAACACCGTTGCAGTTATATCTGATGGCCAAATAGTTGAGAGTGGCACCCATGATGAGCTTCTTAGCAAGGACGGTGTCTATACTGCATTAGTCAAGAGACAACTACAAACAACAACAAAAGTCGAAATCTAG 1998 0.4289 MVRKNRGNLWVSLYQYLYRRVEVREEALIERLKMNGLRSERAPLLESQRGGRGKRDGSSEDQVSDLEHGDAVPAANVGFCRVFSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDLRTPEERDEALDAVKSTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEITRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIRGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPEPGSKCPLGDQDGEVELDDVWFAYPSRPNHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDPVDLENASKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVISDGQIVESGTHDELLSKDGVYTALVKRQLQTTTKVEI 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2476g00035 665 Gene3D ABC transporter type 1, transmembrane domain 145 415 IPR036640 GO:0005524|GO:0016020
Vium2476g00035 665 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 76 659 IPR039421 -
Vium2476g00035 665 ProSitePatterns ABC transporters family signature. 558 572 IPR017871 GO:0005524|GO:0016887
Vium2476g00035 665 CDD ABC_6TM_AtABCB27_like 96 392 - -
Vium2476g00035 665 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 384 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2476g00035 665 SUPERFAMILY ABC transporter transmembrane region 81 399 IPR036640 GO:0005524|GO:0016020
Vium2476g00035 665 CDD ABC_MTABC3_MDL1_MDL2 418 656 - -
Vium2476g00035 665 Pfam ABC transporter 436 586 IPR003439 GO:0005524
Vium2476g00035 665 Gene3D - 416 660 IPR027417 -
Vium2476g00035 665 MobiDBLite consensus disorder prediction 43 65 - -
Vium2476g00035 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 656 IPR027417 -
Vium2476g00035 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 655 IPR003439 GO:0005524
Vium2476g00035 665 Pfam ABC transporter transmembrane region 93 366 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2476g00035 665 SMART AAA_5 445 639 IPR003593 GO:0016887
Vium2476g00035 665 MobiDBLite consensus disorder prediction 45 65 - -
Vium2476g00035 665 FunFam ABC transporter B family member 25 416 658 - -
Vium2476g00035 665 PIRSF ABC_prm/ATPase_B 17 664 - -
Vium2476g00035 665 FunFam ABC transporter B family member 25 145 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2476g00035 Vium-Chr2476 161554 169331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2476g00035 79 663 Calmodulin-binding Proteins AT2G36910 33.445 5.68e-92 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2476g00035 - - var:108320153 1244.95