Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2476g00019 ATGATGAATGAAAGTTCAAGTAAAGTTCAGCAAGGCAATCAACAAGAGGGCGAGAACATTAAAATTGAAAAGTTGTCAAAGGCAGCCTCCACCTCAAGATCATGGTCAGCATTCAGAAACCCAAGAATTGTACGAGTGTCTCGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTGCCAACAGCAATTCAGTTATATGATCTTCAAGACAAGCTTGGACTGAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTCACCAAATCTGATATTGATAAACTCCCACCACTTCAATTTCCTCACTGTTTTGCTCAGTTTCACCAACAAACTCCACTGTCAGGTACCTCTCAGTTCTCTCTTGGAAGCTTGTATGATGGTGTTAATTCCTCTTTTTTAAAGGATGGGGGAAACCAAAACCTCATGACAAAGTCAACAAGGTATTGGGATTTAGATTCTCAAAACCGTACGGAGTTAGCTGAAAGTGTCTCAACCTCCCAGAAGGGCAAGTTCTGGATCAAACCAAATGAACTAGAAAATCATCAAAATGGAATTGTTGGTGTTAGTACTCGCAATAGAGAAGAATCTTCAGCTCATTGTAAGGTCTTCCCCCTTGGGACTAATAGCTCTTATTTACCTGGTTTGTCAAACAATGCCATCACACATAACTCCTACCATCATTCTGAACCTTCAACTCTATCTTTATCCCACCTTGGAAGCCATGAATTATTTCCTTCCCATCCAAGCAGTGGCAGTAGTGTGCAATTTTCATCTTCTAATTTCTGTGGAGCATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCGGTGGAAAGCGATCCAAGACAATCCAACAGTGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTATTCATTCCACCACTTCACCTCTTAGACGCCTTCCAACATCTTTAAGTTCCAAGCTTTTTGATTCAGATAATAGCGATCGTAGCCAACAAGGTAAGGGCAGTACTCGTTCTTGA 1095 0.421 MMNESSSKVQQGNQQEGENIKIEKLSKAASTSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQFHQQTPLSGTSQFSLGSLYDGVNSSFLKDGGNQNLMTKSTRYWDLDSQNRTELAESVSTSQKGKFWIKPNELENHQNGIVGVSTRNREESSAHCKVFPLGTNSSYLPGLSNNAITHNSYHHSEPSTLSLSHLGSHELFPSHPSSGSSVQFSSSNFCGASGPQLLFCPPSATPSAFYSVESDPRQSNSVQIFSSSSQVMMPHPLIQSIHSTTSPLRRLPTSLSSKLFDSDNSDRSQQGKGSTRS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2476g00019 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 357 IPR005333 GO:0003700
Vium2476g00019 364 MobiDBLite consensus disorder prediction 330 364 - -
Vium2476g00019 364 MobiDBLite consensus disorder prediction 1 25 - -
Vium2476g00019 364 Pfam TCP family transcription factor 52 173 IPR017887 -
Vium2476g00019 364 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2476g00019 Vium-Chr2476 116042 119199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2476g00019 36 195 TCP Transcription Factor Family AT5G60970 55.172 3.84e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium2476g00019 TCP 3.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2476g00019 - - gmx:102665855 502.671