Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2476g00005 ATGGCCGCAAAATCGATCACACCCGACGGCGTTTCGACGCTCCTCGCCAACCCTTCCCCAGATTCTCTGTCGGATCTTCCCGACATTGTTGTTCAAATAGTTGATCTCAAGCCCAGCGGCAACAGATACATGTTCTCGGCCAGTGATGGGAAAAAGAAACTGAGGGCAATTCTTCCTTCGAATATGTATTCCGAGGTTCTCTCTGGGAACATTCAAAACCTAGGTCTTGTTCGAATTCTTGATTACACTCTCAATGACATCCCTAACAAATCTGAAAAGTACCTTATTGTCACGAAATGTGAGCCGGTATCTCCCGCTCTTGAAAATGAGATCAAGTGCGAGGAGCCTGGTATTCTTTTGAAACCCAAAGAAGAGGTTGGATCGAAGACTGAAGGTGGTGCTGGTGTTGTTTTGAAGCAAAAGCAGGAAGTGGTTACAAAATCTGCTGCGCAGATTCTAAATGATCAACATAGAAATTCGGCTCCTGCTGCACGCTTGGCAATTACGCGTAGGGTGCGTCCACTCGTTTCGTTGAATCCTTATCAGGGTAATTGGACGATAAAAGTTAGCGTTAGTAACAAAGGAAACATGCGTACCTATAAGAACGCTAGGGGTGAAGGTTGTGTATTCAATGTTGAATTGACGGACGAAGAAGGTACTCAGATCCAGGCAACCATGTTTAACGATGCCGCCAGAAAATTTTACGACAAATTTGTTCTGGGAAAGGTTTATTATATTTCGAAGGGGACACTAAAAGTTGCCAACAAACAGTTCAAAACTGTTCAAAATGATTATGAAATGACGCTCAACGAGAATTCTGAGGTGGAAGAGGTGGCGGGTGAAGCAAGTTTTGTCCCGGAAACAAAATTTAGCTTTGTCCAGATTGATCAGCTAGGTCCTTATGTCAACAAGTCTGAACTTGTGGATGTCATTGGAGTTGTTAAGAATGTTTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGCATTCCAAAGCGCGACATTACTATCGCTGATGAAACGAAGAAGACGGTAGTTGTGTCGTTGTGGAATGATCTTGCTACTAACACAGGACAAGATTTACTGGACATTGCTGATCAATCTCCAGTTGTTGCAATCAAGTCTCTAAGGGTTGGGGACTTCGAAGGTGTTTCTTTGTCAACTATAAGCAGAAGTGTAATTCTGGTAAATCCAGACGTACCCGAAGCAAAGAAACTCAGAAGCTGGTATGAATCTGAAGGCAAAGATGCTTCAATGGACTCTGTAGGTTCTGGTTCAAGTCCAACATCTAATAATGGAATTAGATCAGTGTACACTGATCGTGTTCCACTTGCTCACATAACCTCCGACCAATCATTGGGAGAGACGAAGCCTGCGTTTTTCAGCGTTAGAGGATATATAAGCTTCATAAAGCCTGACCAAGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAACATTGGTTCTGGATATTGGTGCGAAGGATGCCAGAAAAGCGATGAACAATGCAGTTTAAGGTATATTATGGTTGCCAAGGTTTGCGATACAAGTGGTGAGGCTTTCTTCTCCGTCTTTAATCAGGAAGCTGAGAAGATTGTTGGATGCTCTGCAGATGCTTTAGATGACCTTAAATCACAAGAAGGAGAAGATAATCCTTATAATCTGAAATTGAAGCAAGGAACTTGGGTTCCGCATCTTTTCCGCGTCAGTGTTACCCAGAACGAGTATAATAACGAGAAGCGGCAAAGGATAACGGTTCGAGCAGTTGTTCCTGTTGACTTCGCAGCTGAATCAAGGATGATGCTGGAAGAAATATCAAAGATGAGAGCATAA 1854 0.4293 MAAKSITPDGVSTLLANPSPDSLSDLPDIVVQIVDLKPSGNRYMFSASDGKKKLRAILPSNMYSEVLSGNIQNLGLVRILDYTLNDIPNKSEKYLIVTKCEPVSPALENEIKCEEPGILLKPKEEVGSKTEGGAGVVLKQKQEVVTKSAAQILNDQHRNSAPAARLAITRRVRPLVSLNPYQGNWTIKVSVSNKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFSFVQIDQLGPYVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQDLLDIADQSPVVAIKSLRVGDFEGVSLSTISRSVILVNPDVPEAKKLRSWYESEGKDASMDSVGSGSSPTSNNGIRSVYTDRVPLAHITSDQSLGETKPAFFSVRGYISFIKPDQAMWYRACKTCNKKVTENIGSGYWCEGCQKSDEQCSLRYIMVAKVCDTSGEAFFSVFNQEAEKIVGCSADALDDLKSQEGEDNPYNLKLKQGTWVPHLFRVSVTQNEYNNEKRQRITVRAVVPVDFAAESRMMLEEISKMRA 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2476g00005 617 Gene3D - 171 280 IPR012340 -
Vium2476g00005 617 FunFam Replication protein A subunit 171 280 - -
Vium2476g00005 617 SUPERFAMILY Nucleic acid-binding proteins 11 106 IPR012340 -
Vium2476g00005 617 MobiDBLite consensus disorder prediction 417 437 - -
Vium2476g00005 617 Pfam Replication factor-A C terminal domain 462 607 IPR013955 -
Vium2476g00005 617 SUPERFAMILY Nucleic acid-binding proteins 290 419 IPR012340 -
Vium2476g00005 617 FunFam Replication protein A subunit 284 423 - -
Vium2476g00005 617 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vium2476g00005 617 NCBIfam replication factor-a protein 1 (rpa1) 27 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium2476g00005 617 Pfam Replication protein A OB domain 302 399 IPR031657 -
Vium2476g00005 617 Gene3D - 5 116 IPR012340 -
Vium2476g00005 617 Pfam OB-fold nucleic acid binding domain 186 271 IPR004365 GO:0003676
Vium2476g00005 617 Gene3D - 285 425 IPR012340 -
Vium2476g00005 617 CDD RPA1_DBD_A 174 277 - -
Vium2476g00005 617 Gene3D - 426 615 IPR012340 -
Vium2476g00005 617 CDD RPA1_DBD_B 307 413 - -
Vium2476g00005 617 MobiDBLite consensus disorder prediction 421 437 - -
Vium2476g00005 617 CDD RPA1_DBD_C 451 614 IPR047192 -
Vium2476g00005 617 PANTHER REPLICATION FACTOR A 1, RFA1 185 578 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium2476g00005 617 FunFam Replication protein A subunit 5 115 - -
Vium2476g00005 617 SUPERFAMILY Nucleic acid-binding proteins 173 279 IPR012340 -
Vium2476g00005 617 SUPERFAMILY Nucleic acid-binding proteins 440 615 IPR012340 -
Vium2476g00005 617 FunFam Replication protein A subunit 428 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2476g00005 Vium-Chr2476 41863 45160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2476g00005 5 614 Core DNA Replication Machinery Family AT5G08020 68.576 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2476g00005 K07466 - gmx:100777091 1026.16