Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2476g00002 ATGGCTTTCTTTGGTAGACTTGGGAATTTGTTAAGACAGACTGCTAGCAGACAGGTTAGTTCAGAGTTGCGGTCGTCCCCTTCCTTATTCCAGGCCATACGCTGTCTGTCTTCTGCTCCAAGCTCCAAGCTGTTTATAGGAGGTGTTTCGTTTTCCACCGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAACTGGAAGATCCAGGGGGTTTGGATTTGTTACGTACACGTCTGTTGAGGAGGCATCGAGTGCTATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGATCACGAGGTGGTGGCTATGGAGGTGGATATGGTGGTGGTTTTGGCGCTGGAGGTGGTGGTGGCTATGGAGGAGGTGCATATGGTGGTGGTGGCTATGGTGGAAATGTTGCTGGTGGTTATGGTGGTGGCGGCTATGGTGGAAATTCTGGAGGTGGTTATGGCGGTGGTAGCTATGGTGGAAATGCTGGTGGTGGCAGCTATGGTGCTGGTGGCTATGGATCAGGTGGCAATTTTGGGGACAGTGGCTCTGGCAATAACTATCCTGCTGACAGCGGTGCTGGTGGCAGCTACAGTGGGAATTTTGGTGATGCTGGTGGAATAGGAAATCATGGAAGCTCTGCTGGTTTTGGCAGTAGTGGATATGATGGAAGTGCTGTGGATGGTAGCGGGGCAAGTACTGGAACCAGCTTTGCTGATGGAAGTGGAGGATTAGGCAGTGGTCAATTTGATAGCAAAGCAAGCAGCAATGGAGATGAGGATTTTGGAGATTACAGGGATGACGCTGACGATACTGATAATTTTGCCAAAAGGGCTTGA 900 0.49 MAFFGRLGNLLRQTASRQVSSELRSSPSLFQAIRCLSSAPSSKLFIGGVSFSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFVTYTSVEEASSAIQALDGQDLHGRQIRVNYANERSRGGGYGGGYGGGFGAGGGGGYGGGAYGGGGYGGNVAGGYGGGGYGGNSGGGYGGGSYGGNAGGGSYGAGGYGSGGNFGDSGSGNNYPADSGAGGSYSGNFGDAGGIGNHGSSAGFGSSGYDGSAVDGSGASTGTSFADGSGGLGSGQFDSKASSNGDEDFGDYRDDADDTDNFAKRA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2476g00002 299 SMART rrm1_1 43 116 IPR000504 GO:0003723
Vium2476g00002 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Vium2476g00002 299 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 20 141 - -
Vium2476g00002 299 MobiDBLite consensus disorder prediction 242 299 - -
Vium2476g00002 299 MobiDBLite consensus disorder prediction 242 276 - -
Vium2476g00002 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Vium2476g00002 299 CDD RRM2_NsCP33_like 43 118 - -
Vium2476g00002 299 SUPERFAMILY RNA-binding domain, RBD 39 152 IPR035979 GO:0003676
Vium2476g00002 299 Gene3D - 16 160 IPR012677 -
Vium2476g00002 299 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2476g00002 Vium-Chr2476 15956 19319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2476g00002 39 189 Eukaryotic Initiation Factors Gene Family AT2G36660 26.974 3.65e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2476g00002 K12741 - gmx:100799124 224.557