Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2470g00001 ATGAAATTTGTATTTTGTTATTCAAGATTGGAACTGATATTTTGTTTCATTTCTCTGTTACCAGGAGATATCCATGGTCAATATTCTGACCTTCTGCGACTTTTTGACTACGGTGGATTGCCTCCTCGTTCTAATTACTTATTTTTAGGGGACTATGTTGATCGTGGGAAGCAAAGCTTGGAGACTATATGTCTCCTTCTGGCTTATAAAATAAAATATCCTAATAACTTCTTTCTTCTGAGGGGCAACCATGAATGTGCTTCTATAAACCGAATCTATGGATTTTATGATGAGTGTAAACGAAGATTCAATGTGAGGCTTTGGAAAGTGTTCACAGAATGTTTCAACTGCTTGCCAGTGGCAGCTCTGATTGATGAAAAAATACTCTGCATGCATGGTGGACTGTCTCCTGACTTACACAATTTCAATCAGATAAAGAGTTTGCCGCGTCCTACTGAAGTACCTGAAACTGGTCTACTATGTGACCTCCTTTGGTCTGATCCTAGCAGTGACATTCGGGGTTGGGGAGAAAACGATCGTGGAGTTTCCTATACTTTTGGTGCTGACAGGGTCACTGAATTCCTTCAGAAGCATGATCTTGATTTGATTTGCAGGGCCCATCAGGTTGTGGAAGACGGATATGAATTCTTTGCTTACAGACAACTTGTGACTATCTTCTCGGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCAATGATGACTGTTGATGAGTCACTCGTCTGCTCTTTTCAAATATTGAAGCCTGTAGATAAAAAGCCTATTAAGTTTCGCTTTGGGAGCACAACTACATTTAAACCTACTACTCCAACAAAAGCTAAGGTATTTTTATTTCTTGAATCCATTCCTGAGCTTGCTATGTTCAACAAAAATGGTAAATTAATGTAG 912 0.3936 MKFVFCYSRLELIFCFISLLPGDIHGQYSDLLRLFDYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPNNFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTECFNCLPVAALIDEKILCMHGGLSPDLHNFNQIKSLPRPTEVPETGLLCDLLWSDPSSDIRGWGENDRGVSYTFGADRVTEFLQKHDLDLICRAHQVVEDGYEFFAYRQLVTIFSAPNYCGEFDNAGAMMTVDESLVCSFQILKPVDKKPIKFRFGSTTTFKPTTPTKAKVFLFLESIPELAMFNKNGKLM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2470g00001 303 PRINTS Serine/threonine phosphatase family signature 46 73 IPR006186 GO:0016787
Vium2470g00001 303 PRINTS Serine/threonine phosphatase family signature 113 139 IPR006186 GO:0016787
Vium2470g00001 303 PRINTS Serine/threonine phosphatase family signature 221 237 IPR006186 GO:0016787
Vium2470g00001 303 PRINTS Serine/threonine phosphatase family signature 142 169 IPR006186 GO:0016787
Vium2470g00001 303 PRINTS Serine/threonine phosphatase family signature 17 44 IPR006186 GO:0016787
Vium2470g00001 303 PRINTS Serine/threonine phosphatase family signature 199 219 IPR006186 GO:0016787
Vium2470g00001 303 PRINTS Serine/threonine phosphatase family signature 79 103 IPR006186 GO:0016787
Vium2470g00001 303 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 21 261 - -
Vium2470g00001 303 SUPERFAMILY Metallo-dependent phosphatases 22 268 IPR029052 -
Vium2470g00001 303 ProSitePatterns Serine/threonine specific protein phosphatases signature. 80 85 IPR006186 GO:0016787
Vium2470g00001 303 FunFam Serine/threonine-protein phosphatase 16 269 - -
Vium2470g00001 303 SMART pp2a_7 5 259 IPR006186 GO:0016787
Vium2470g00001 303 Pfam Calcineurin-like phosphoesterase 22 209 IPR004843 GO:0016787
Vium2470g00001 303 Gene3D - 17 267 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2470g00001 Vium-Chr2470 6899 8333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2470g00001 22 202 Calmodulin-binding Proteins AT5G63870 33.796 7.75e-27 105