Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2469g00012 ATGGGAAAGAAGAGAAGTAGGGTTTTGGAGGATGAGGATTTCGAAACCCTCTCTTCTGATCAGAACGAACACGCCCTCTACCAGGTTCTTGGAGTGGAGAGAACAGCGTCTCAACAGGAAATAAAGAAGGCATACTACAAGTTGGCATTAAAGCTACATCCTGATAAGAATCCCGGTGATGAGGAAGCTAAAGCTAAGTTTCAGCAATTGCAACATGTTATCTCAATTCTTGGTGATGAAGAAAAGCGGGCTGTATATGATCAGACTGGATGTATTGATGACGCTGAGCTTGCAGGGGATGTTGTTCAGAATCTCAAAGAATATTTCAGAGCAATGTACAAGAAGGTCACTGAAACCGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCTGAGAGAAATGATTTGATTGACCTCTACAAGAAGTACAAGGGTAAAATGAATAGGTTATTCCATTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTTGATGAGACTATAGCTGCTGGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGGCAAAGAAATTATCAGAAACCAAGCCACCTACTAGTCCCATAAGAAGGCATGCAAAATCATCAAAGAAACAATCAGAAACAGATCTGGGTGCCATCATATCACAGCGTCAACATGAGAGGAAAGACCGCCTTAATTCTATGTTCTCATCTCTAATTTCAAAGTATGGTGGGGATCAAATGCCAGAGCCCTCTGAAGAGGAATTTGAAGCTGCACAGAGAAAACTGGAAAAACGTAGGTCCTCAAAAAAGTCAAAGCAAAGATAA 834 0.4065 MGKKRSRVLEDEDFETLSSDQNEHALYQVLGVERTASQQEIKKAYYKLALKLHPDKNPGDEEAKAKFQQLQHVISILGDEEKRAVYDQTGCIDDAELAGDVVQNLKEYFRAMYKKVTETDIEEFEANYRGSDSERNDLIDLYKKYKGKMNRLFHSMLCSDPKLDSHRFKDILDETIAAGELKETKAYKKWAKKLSETKPPTSPIRRHAKSSKKQSETDLGAIISQRQHERKDRLNSMFSSLISKYGGDQMPEPSEEEFEAAQRKLEKRRSSKKSKQR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2469g00012 277 CDD DnaJ 27 79 IPR001623 -
Vium2469g00012 277 PRINTS DnaJ domain signature 82 101 IPR001623 -
Vium2469g00012 277 PRINTS DnaJ domain signature 45 60 IPR001623 -
Vium2469g00012 277 PRINTS DnaJ domain signature 62 82 IPR001623 -
Vium2469g00012 277 PRINTS DnaJ domain signature 27 45 IPR001623 -
Vium2469g00012 277 SUPERFAMILY Chaperone J-domain 24 96 IPR036869 -
Vium2469g00012 277 MobiDBLite consensus disorder prediction 192 277 - -
Vium2469g00012 277 MobiDBLite consensus disorder prediction 192 214 - -
Vium2469g00012 277 Gene3D DnaJ domain 11 118 IPR036869 -
Vium2469g00012 277 Pfam DnaJ domain 26 87 IPR001623 -
Vium2469g00012 277 ProSiteProfiles dnaJ domain profile. 25 90 IPR001623 -
Vium2469g00012 277 SMART dnaj_3 24 82 IPR001623 -
Vium2469g00012 277 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 16 276 IPR042977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2469g00012 Vium-Chr2469 137496 140206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2469g00012 27 87 C2H2 Transcription Factor Family AT1G74250 42.424 1.09e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2469g00012 K09529 - gmx:100781463 440.654