Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2469g00011 ATGATATATATTGAAGCTGTAGGTTTGTGTCCGTTTATAGCATTTGGAAGAAGCAAAAGGCTTCTTTTGGAGGTTTCCATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGGGCACTTGGTGCAACTTTTCTTGTTCTCCACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGTCCAAACAAGCTGACATATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATTACATATGCATTATAACCGGCTATTGCGAAGGGGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAATGGTTGACTCAGTTGCTACTAGCTGTGGACTACCTTCACTCCAATCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGTTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATCCTGAAGACCTCACTTCTCCGGCTTTTGGAACCCTTAACTACATGTGTCCCGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGTATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCGTTGCCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACACAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCTTCATCTATTTATTTGCCAGTACATCTTATAAATAGTAACTCTCCAAAGGATAAAACTAAAAACAAATCTAGTGGTAGCAAAGACCATTGGGATAAGGAAGCAGAATTAGCAGGATTAGTAAATCGGTTGGACCGAATTTATCCATTGGAGGGAAATGGAGATGTACAGACACGGAACCCGCATAATGAGGACAAGCTAGCAATGCCAACCAAAGACAAGGTTGAGACCAAAATGGTTGATTCTACCAGCTATACTCAGGAATTTTCTACGAGTGTTAGTGGCTCAAAAGATGGCTCTACAACATCTGAATCAACTGTTTGCAGTGTGAGCAAGGAAGGAGACTTTAAAAATAGATTTGCAAGGGACCCAGCTGACAGTGAGATCACTTCAAAAAGTACAATAGATTGTGTGCATGAAGAACAAGGACTTACTACCCATAAGTCATACGCATTTGACATAAATACAGAAATTAAAAATGTTGAAGATATTCTTTCCAATGAAGATCTCATTACAGATGAAGCACTCAGCGAAGGTGCCAAAACTGGGGATTACAGTAAATCCACAATATCCAGTGAAGGCAGCGAGGGCAATGATAAAGATGAGTCCATTGATGAGATCATGTCAAAGAGTACCCTTGATTCTGTGCATGAAGAACAAGGACTTACGGTGGATCGTTTTCGGAAGTCGGATGTGGTTGACCCAAGCACAGTATCTACAGAAGTTGAAGATAATTTTTCCAGTGAAGGTTTTGATAAAATGGAAACAGAGAGGGAAAATGGCAAACTTGAGGACTCCAAAAAATCAACAGTGCTCACTGAAAACAGCGAAGGCAATGATAAAGATGTGTCCATTGAAGAGATAACTTCAAAGAGTATTCTAGAATCTGTGCATGATGAACAAGAATTTACTGCTGAACATTTTCCAAAGTCAGATGTGATTGACACGAATGCAGTGGCTACAAAATTTGAAGATAATTTTTGCAATGAAGCATTTTGTGAAACTGGAACAGAGACGAAAAATGGCAGACAGGACTCCAGAATATTAGGGTACATTGATGACATCAGATTGAAGAGTACACTCGATTCTATGCATGAAGAGAAATGGTTTATAGCTGAACATGCTCAAAAGTTAGATCTTGTTGACATAAAAGCCACAGCTTCAATAGATGTGGACAGAGTTTCTAATGAAGGTTCTGGTGAAGCTGAAGCACAGAGTGAAGATGCCAAACTTGAGTGCTCCAGTAAATCAATAATTTCCTATGATAACAGCAACGATAATGATGAAGATGGATCTGGTGGTGAGATCACTTCAAAGAGTATGCTAGAATCTGTAGGTGAAGAACAAGGACTCACTGCTGAGCATTTCCAGACGTCTGATGCAATAGACATAACTACAGTGACTACAGAATTTGAAGATAAACTTTCCAATGAAGGTTTTGATAGAGCTGAAACACAGGAGAAAGAAGCTAAACCTGAGGGCTCCATTAAATCTTTGTTCAGTGAAGAAGGCAGCAGCAGTGATAAAGACGGGTCCATTGATGAGGAAAGGTCATCATCCCCACTGGCACAATCTGTTAGGGTTGAACATGACACTGAAACTGGAAGCAGCTTGAAGGAAGATGAAAAACCTGAAGGATTTAAAGAGGGCTCACACACGAACAGCTTGACTTCTGATACTAAGGATGCGCATCCAGGTAAGGATGAAAACAGAGAAGACACCCACACAATCAGTTGCTCAACGTGTAAAGAAGACAGCAAGGCTGTTGTGACCCAGAAGCCAGCAAATGACATTTCATTAATGAAGCGTCTTTCAAGAGGCAGTAATGCTTCTTGCCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTATGTGCACAGCTACTTCAGCAAGGAAACCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTGTCTTCCAGAGAAACAGCGATATTGCTAACAAAAAGCCTCATGGCCTCCCAATAA 2907 0.4076 MIYIEAVGLCPFIAFGRSKRLLLEVSMESSGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKIRLSKQADISKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNPEDLTSPAFGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIYLPVHLINSNSPKDKTKNKSSGSKDHWDKEAELAGLVNRLDRIYPLEGNGDVQTRNPHNEDKLAMPTKDKVETKMVDSTSYTQEFSTSVSGSKDGSTTSESTVCSVSKEGDFKNRFARDPADSEITSKSTIDCVHEEQGLTTHKSYAFDINTEIKNVEDILSNEDLITDEALSEGAKTGDYSKSTISSEGSEGNDKDESIDEIMSKSTLDSVHEEQGLTVDRFRKSDVVDPSTVSTEVEDNFSSEGFDKMETERENGKLEDSKKSTVLTENSEGNDKDVSIEEITSKSILESVHDEQEFTAEHFPKSDVIDTNAVATKFEDNFCNEAFCETGTETKNGRQDSRILGYIDDIRLKSTLDSMHEEKWFIAEHAQKLDLVDIKATASIDVDRVSNEGSGEAEAQSEDAKLECSSKSIISYDNSNDNDEDGSGGEITSKSMLESVGEEQGLTAEHFQTSDAIDITTVTTEFEDKLSNEGFDRAETQEKEAKPEGSIKSLFSEEGSSSDKDGSIDEERSSSPLAQSVRVEHDTETGSSLKEDEKPEGFKEGSHTNSLTSDTKDAHPGKDENREDTHTISCSTCKEDSKAVVTQKPANDISLMKRLSRGSNASCQQRADALESLLELCAQLLQQGNLEELAAVLRPFGEDAVSVSSRETAILLTKSLMASQ 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2469g00011 968 MobiDBLite consensus disorder prediction 775 795 - -
Vium2469g00011 968 MobiDBLite consensus disorder prediction 531 579 - -
Vium2469g00011 968 Pfam Protein kinase domain 36 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2469g00011 968 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 33 923 - -
Vium2469g00011 968 MobiDBLite consensus disorder prediction 478 503 - -
Vium2469g00011 968 ProSiteProfiles Protein kinase domain profile. 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2469g00011 968 SMART serkin_6 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2469g00011 968 Gene3D Transferase(Phosphotransferase) domain 1 118 339 - -
Vium2469g00011 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vium2469g00011 968 MobiDBLite consensus disorder prediction 775 877 - -
Vium2469g00011 968 Gene3D Phosphorylase Kinase; domain 1 17 115 - -
Vium2469g00011 968 CDD STKc_Nek 35 290 - -
Vium2469g00011 968 MobiDBLite consensus disorder prediction 545 579 - -
Vium2469g00011 968 MobiDBLite consensus disorder prediction 831 848 - -
Vium2469g00011 968 MobiDBLite consensus disorder prediction 860 877 - -
Vium2469g00011 968 SUPERFAMILY Protein kinase-like (PK-like) 32 311 IPR011009 -
Vium2469g00011 968 MobiDBLite consensus disorder prediction 816 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2469g00011 Vium-Chr2469 114621 122734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2469g00011 33 291 AGC Kinase Gene Family AT1G45160 27.458 3.34e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium2469g00011 Pkinase 8.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2469g00011 K08857 - gmx:100818558 1217.6