LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2469g00010	ATGATATATATTGAAGCTGTAGGTTTGTGTCCGTTTATAGCATTTGGAAGAAGCAAAAGGCTTCTTTTGGAGGTTTCCATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGGGCACTTGGTGCAACTTTTCTTGTTCTCCACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGTCCAAACAAGCTGACATATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATTACATATGCATTATAACCGGCTATTGCGAAGGGGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAATGGTTGACTCAGTTGCTACTAGCTGTGGACTACCTTCACTCCAATCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGTTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATCCTGAAGACCTCACTTCTCCGGCTTTTGGAACCCTTAACTACATGTGTCCCGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGTATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCGTTGCCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACACAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCTTCATCTATTTATTTGCCAGTACATCTTATAAATAGTAACTCTCCAAAGGATAAAACTAAAAACAAATCTAGTGGTAGCAAAGACCATTGGGATAAGGAAGCAGAATTAGCAGGATTAGTAAATCGGTTGGACCGAATTTATCCATTGGAGGGAAATGGAGATGTACAGACACGGAACCCGCATAATGAGGACAAGCTAGCAATGCCAACCAAAGACAAGGTTGAGACCAAAATGGTTGATTCTACCAGCTATACTCAGGAATTTTCTACGAGTGTTAGTGGCTCAAAAGATGGCTCTACAACATCTGAATCAACTGTTTGCAGTGTGAGCAAGGAAGGAGACTTTAAAAATAGATTTGCAAGGGACCCAGCTGACAGTGAAGAACAAGGACTTACTACCCATAAGTCATACGCATTTGACATAAATACAGAAATTAAAAATGTTGAAGATATTCTTTCCAATGAAGATCTCATTACAGATGAAGCACTCAGCGAAGGTGCCAAAACTGGGGATTACAGTAAATCCACAATATCCAGTGAAGGCAGCGAGGGCAATGATAAAGATGAGTCCATTGATGAGATCATGTCAAAGAGTACCCTTGATTCTGTGCATGAAGAACAAGGACTTACGGTGGATCGTTTTCGGAAGTCGGATGTGGTTGACCCAAGCACAGTATCTACAGAAGTTGAAGATAATTTTTCCAGTGAAGGTTTTGATAAAATGGAAACAGAGAGGGAAAATGGCAAACTTGAGGACTCCAAAAAATCAACAGTGCTCACTGAAAACAGCGAAGGCAATGATAAAGATGTGTCCATTGAAGAGATAACTTCAAAGAGTATTCTAGAATCTGTGCATGATGAACAAGAATTTACTGCTGAACATTTTCCAAAGTCAGATGTGATTGACACGAATGCAGTGGCTACAAAATTTGAAGATAATTTTTGCAATGAAGCATTTTGTGAAACTGGAACAGAGACGAAAAATGGCAGACAGGACTCCAGAATATTAGGGTACATTGATGACATCAGATTGAAGAGTACACTCGATTCTATGCATGAAGAGAAATGGTTTATAGCTGAACATGCTCAAAAGTTAGATCTTGTTGACATAAAAGCCACAGCTTCAATAGATGTGGACAGAGTTTCTAATGAAGGTTCTGGTGAAGCTGAAGCACAGAGTGAAGATGCCAAACTTGAGTGCTCCAGTAAATCAATAATTTCCTATGATAACAGCAACGATAATGATGAAGATGGATCTGGTGGTGAGATCACTTCAAAGAGTATGCTAGAATCTGTAGGTGAAGAACAAGGACTCACTGCTGAGCATTTCCAGACGTCTGATGCAATAGACATAACTACAGTGACTACAGAATTTGAAGATAAACTTTCCAATGAAGGTTTTGATAGAGCTGAAACACAGGAGAAAGAAGCTAAACCTGAGGGCTCCATTAAATCTTTGTTCAGTGAAGAAGGCAGCAGCAGTGATAAAGACGGGTCCATTGATGAGGAAAGGTCATCATCCCCACTGGCACAATCTGTTAGGGTTGAACATGACACTGAAACTGGAAGCAGCTTGAAGGAAGATGAAAAACCTGAAGGATTTAAAGAGGGCTCACACACGAACAGCTTGACTTCTGATACTAAGGATGCGCATCCAGGTAAGGATGAAAACAGAGAAGACACCCACACAATCAGTTGCTCAACGTGTAAAGAAGACAGCAAGGCTGTTGTGACCCAGAAGCCAGCAAATGACATTTCATTAATGAAGCGTCTTTCAAGAGGCAGTAATGCTTCTTGCCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTATGTGCACAGCTACTTCAGCAAGGAAACCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTGTCTTCCAGAGAAACAGCGATATTGCTAACAAAAAGCCTCATGGCCTCCCAATAA	2871	0.4086	MIYIEAVGLCPFIAFGRSKRLLLEVSMESSGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKIRLSKQADISKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNPEDLTSPAFGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIYLPVHLINSNSPKDKTKNKSSGSKDHWDKEAELAGLVNRLDRIYPLEGNGDVQTRNPHNEDKLAMPTKDKVETKMVDSTSYTQEFSTSVSGSKDGSTTSESTVCSVSKEGDFKNRFARDPADSEEQGLTTHKSYAFDINTEIKNVEDILSNEDLITDEALSEGAKTGDYSKSTISSEGSEGNDKDESIDEIMSKSTLDSVHEEQGLTVDRFRKSDVVDPSTVSTEVEDNFSSEGFDKMETERENGKLEDSKKSTVLTENSEGNDKDVSIEEITSKSILESVHDEQEFTAEHFPKSDVIDTNAVATKFEDNFCNEAFCETGTETKNGRQDSRILGYIDDIRLKSTLDSMHEEKWFIAEHAQKLDLVDIKATASIDVDRVSNEGSGEAEAQSEDAKLECSSKSIISYDNSNDNDEDGSGGEITSKSMLESVGEEQGLTAEHFQTSDAIDITTVTTEFEDKLSNEGFDRAETQEKEAKPEGSIKSLFSEEGSSSDKDGSIDEERSSSPLAQSVRVEHDTETGSSLKEDEKPEGFKEGSHTNSLTSDTKDAHPGKDENREDTHTISCSTCKEDSKAVVTQKPANDISLMKRLSRGSNASCQQRADALESLLELCAQLLQQGNLEELAAVLRPFGEDAVSVSSRETAILLTKSLMASQ	956

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	533	567	-	-
	Vium2469g00010	956	Gene3D	Transferase(Phosphotransferase) domain 1	118	339	-	-
	Vium2469g00010	956	Gene3D	Phosphorylase Kinase; domain 1	17	115	-	-
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	519	567	-	-
	Vium2469g00010	956	ProSiteProfiles	Protein kinase domain profile.	36	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2469g00010	956	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	33	911	-	-
	Vium2469g00010	956	Pfam	Protein kinase domain	36	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	386	405	-	-
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	763	865	-	-
	Vium2469g00010	956	SMART	serkin_6	36	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	819	836	-	-
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	466	491	-	-
	Vium2469g00010	956	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	848	865	-	-
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	804	818	-	-
	Vium2469g00010	956	CDD	STKc_Nek	35	290	-	-
	Vium2469g00010	956	MobiDBLite	consensus disorder prediction	763	783	-	-
	Vium2469g00010	956	SUPERFAMILY	Protein kinase-like (PK-like)	32	311	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2469g00010	Vium-Chr2469	114621	122734	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2469g00010	33	291	AGC Kinase Gene Family	AT1G45160	27.458	3.63e-29	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Vium2469g00010		Pkinase	8.2e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2469g00010	K08857		-	gmx:100818558	1189.48