Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2469g00008 ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGGGCACTTGGTGCAACTTTTCTTGTTCTCCACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGTCCAAACAAGCTGACATATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATTACATATGCATTATAACCGGCTATTGCGAAGGGGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAATGGTTGACTCAGTTGCTACTAGCTGTGGACTACCTTCACTCCAATCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGTTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATCCTGAAGACCTCACTTCTCCGGCTTTTGGAACCCTTAACTACATGTGTCCCGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGTATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCGTTGCCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACACAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCTTCATCTATTTATTTGCCAGTACATCTTATAAATAGTAACTCTCCAAAGGATAAAACTAAAAACAAATCTAGTGGTAGCAAAGACCATTGGGATAAGGAAGCAGAATTAGCAGGATTAGTAAATCGGTTGGACCGAATTTATCCATTGGAGGGAAATGGAGATGTACAGACACGGAACCCGCATAATGAGGACAAGCTAGCAATGCCAACCAAAGACAAGGTTGAGACCAAAATGGTTGATTCTACCAGCTATACTCAGGAATTTTCTACGAGTGTTAGTGGCTCAAAAGATGGCTCTACAACATCTGAATCAACTGTTTGCAGTGTGAGCAAGGAAGGAGACTTTAAAAATAGATTTGCAAGGGACCCAGCTGACAGTGAGATCACTTCAAAAAGTACAATAGATTGTGTGCATGAAGAACAAGGACTTACTACCCATAAGTCATACGCATTTGACATAAATACAGAAATTAAAAATGTTGAAGATATTCTTTCCAATGAAGATCTCATTACAGATGAAGCACTCAGCGAAGGTGCCAAAACTGGGGATTACAGTAAATCCACAATATCCAGTGAAGGCAGCGAGGGCAATGATAAAGATGAGTCCATTGATGAGATCATGTCAAAGAGTACCCTTGATTCTGTGCATGAAGAACAAGGACTTACGGTGGATCGTTTTCGGAAGTCGGATGTGGTTGACCCAAGCACAGTATCTACAGAAGTTGAAGATAATTTTTCCAGTGAAGGTTTTGATAAAATGGAAACAGAGAGGGAAAATGGCAAACTTGAGGACTCCAAAAAATCAACAGTGCTCACTGAAAACAGCGAAGGCAATGATAAAGATGTGTCCATTGAAGAGATAACTTCAAAGAGTATTCTAGAATCTGTGCATGATGAACAAGAATTTACTGCTGAACATTTTCCAAAGTCAGATGTGATTGACACGAATGCAGTGGCTACAAAATTTGAAGATAATTTTTGCAATGAAGCATTTTGTGAAACTGGAACAGAGACGAAAAATGGCAGACAGGACTCCAGAATATTAGGGTACATTGATGACATCAGATTGAAGAGTACACTCGATTCTATGCATGAAGAGAAATGGTTTATAGCTGAACATGCTCAAAAGTTAGATCTTGTTGACATAAAAGCCACAGCTTCAATAGATGTGGACAGAGTTTCTAATGAAGGTTCTGGTGAAGCTGAAGCACAGAGTGAAGATGCCAAACTTGAGTGCTCCAGTAAATCAATAATTTCCTATGATAACAGCAACGATAATGATGAAGATGGATCTGGTGGTGAGATCACTTCAAAGAGTATGCTAGAATCTGTAGGTGAAGAACAAGGACTCACTGCTGAGCATTTCCAGACGTCTGATGCAATAGACATAACTACAGTGACTACAGAATTTGAAGATAAACTTTCCAATGAAGGTTTTGATAGAGCTGAAACACAGGAGAAAGAAGCTAAACCTGAGGGCTCCATTAAATCTTTGTTCAGTGAAGAAGGCAGCAGCAGTGATAAAGACGGGTCCATTGATGAGGAAAGGTCATCATCCCCACTGGCACAATCTGTTAGGGTTGAACATGACACTGAAACTGGAAGCAGCTTGAAGGAAGATGAAAAACCTGAAGGATTTAAAGAGGGCTCACACACGAACAGCTTGACTTCTGATACTAAGGATGCGCATCCAGGTAAGGATGAAAACAGAGAAGACACCCACACAATCAGTTGCTCAACGTGTAAAGAAGACAGCAAGGCTGTTGTGACCCAGAAGCCAGCAAATGACATTTCATTAATGAAGCGTCTTTCAAGAGGCAGTAATGCTTCTTGCCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTATGTGCACAGCTACTTCAGCAAGGAAACCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTGTCTTCCAGAGAAACAGCGATATTGCTAACAAAAAGCCTCATGGCCTCCCAATAA 2829 0.4086 MESSGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKIRLSKQADISKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNPEDLTSPAFGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIYLPVHLINSNSPKDKTKNKSSGSKDHWDKEAELAGLVNRLDRIYPLEGNGDVQTRNPHNEDKLAMPTKDKVETKMVDSTSYTQEFSTSVSGSKDGSTTSESTVCSVSKEGDFKNRFARDPADSEITSKSTIDCVHEEQGLTTHKSYAFDINTEIKNVEDILSNEDLITDEALSEGAKTGDYSKSTISSEGSEGNDKDESIDEIMSKSTLDSVHEEQGLTVDRFRKSDVVDPSTVSTEVEDNFSSEGFDKMETERENGKLEDSKKSTVLTENSEGNDKDVSIEEITSKSILESVHDEQEFTAEHFPKSDVIDTNAVATKFEDNFCNEAFCETGTETKNGRQDSRILGYIDDIRLKSTLDSMHEEKWFIAEHAQKLDLVDIKATASIDVDRVSNEGSGEAEAQSEDAKLECSSKSIISYDNSNDNDEDGSGGEITSKSMLESVGEEQGLTAEHFQTSDAIDITTVTTEFEDKLSNEGFDRAETQEKEAKPEGSIKSLFSEEGSSSDKDGSIDEERSSSPLAQSVRVEHDTETGSSLKEDEKPEGFKEGSHTNSLTSDTKDAHPGKDENREDTHTISCSTCKEDSKAVVTQKPANDISLMKRLSRGSNASCQQRADALESLLELCAQLLQQGNLEELAAVLRPFGEDAVSVSSRETAILLTKSLMASQ 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2469g00008 942 SUPERFAMILY Protein kinase-like (PK-like) 7 285 IPR011009 -
Vium2469g00008 942 Gene3D Transferase(Phosphotransferase) domain 1 92 313 - -
Vium2469g00008 942 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 897 - -
Vium2469g00008 942 CDD STKc_Nek 9 264 - -
Vium2469g00008 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vium2469g00008 942 MobiDBLite consensus disorder prediction 805 822 - -
Vium2469g00008 942 MobiDBLite consensus disorder prediction 505 553 - -
Vium2469g00008 942 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2469g00008 942 MobiDBLite consensus disorder prediction 749 769 - -
Vium2469g00008 942 MobiDBLite consensus disorder prediction 452 477 - -
Vium2469g00008 942 MobiDBLite consensus disorder prediction 749 851 - -
Vium2469g00008 942 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2469g00008 942 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2469g00008 942 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Vium2469g00008 942 MobiDBLite consensus disorder prediction 834 851 - -
Vium2469g00008 942 MobiDBLite consensus disorder prediction 790 804 - -
Vium2469g00008 942 MobiDBLite consensus disorder prediction 519 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2469g00008 Vium-Chr2469 114621 122836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2469g00008 7 265 AGC Kinase Gene Family AT1G45160 28.041 2.51e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium2469g00008 Pkinase 8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2469g00008 K08857 - gmx:100818558 1217.6