Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2469g00004 ATGGCAGACCCTTACTCCAATTTCTTCTCACCACCTTTCTTCCACTACCCTTCTCCAAACCCTTCCACCCACCACCATCATCCATATCCTCACAACTTCATCAACCAAACCACCACCACCAACATCACCCACAACACCTTTTTCCACTTCCAACATCACCACCACTTTCAAACCACTACCACCACCTCTTTTTCTTCTTCTTCACCCCCTTCTCCTCCCTTGAGAGAGGCCCTTCCTCTTCTCACCCTCAGCCCAAAAAATTATGACCAACGGGAGGAGCACTACCAGGATCAGGATCAAGATCAGCTTTGCACTGCCATGGATGTCGAAGACAACTTCAACAGGACCCTCCATAACCCCAAAGAAGAGGACCAAGAAGATGATGTTCATCACAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGCGCTGCTGAGATTGCTTCTGTGCTGTCTTCGGCTTGTGCCACAGACAAAGAGCAACGACAAGGAGGAGGAGGAGATTGTGATAATAATGGGATTGATGATTCTTCTTCAGGGTTCTTGTCGAACAGGCTCAACAAGGGACAGTACTGGATTCCTACCCCTTCTCAGATTCTCATTGGACCTACACAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTTAAAGATTTCAGAACTCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGCGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTACTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA 1101 0.4696 MADPYSNFFSPPFFHYPSPNPSTHHHHPYPHNFINQTTTTNITHNTFFHFQHHHHFQTTTTTSFSSSSPPSPPLREALPLLTLSPKNYDQREEHYQDQDQDQLCTAMDVEDNFNRTLHNPKEEDQEDDVHHSVTVALHIGLPSPSAAEIASVLSSACATDKEQRQGGGGDCDNNGIDDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2469g00004 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Vium2469g00004 366 PANTHER ZINC FINGER PROTEIN WIP2 39 364 IPR043584 GO:0003700|GO:0010468
Vium2469g00004 366 FunFam Zinc finger protein WIP2 261 343 - -
Vium2469g00004 366 SMART c2h2final6 292 312 IPR013087 -
Vium2469g00004 366 SMART c2h2final6 208 230 IPR013087 -
Vium2469g00004 366 SUPERFAMILY beta-beta-alpha zinc fingers 274 312 IPR036236 -
Vium2469g00004 366 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Vium2469g00004 366 Gene3D Classic Zinc Finger 270 345 - -
Vium2469g00004 366 Gene3D Classic Zinc Finger 207 230 - -
Vium2469g00004 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 312 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2469g00004 Vium-Chr2469 57014 60627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2469g00004 1 366 C2H2 Transcription Factor Family AT3G57670 62.278 2.46e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2469g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2469g00004 - - gmx:100776343 547.354