Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2467g00011 ATGAAGAGTGAATTAGAGTTGCCACCAGGGTTCAGGTTTCACCCCACGGATGATGAGTTGGTGAACCATTATCTTTGCAGGAAATGCGCTGGTCAACCAATTGCTGCTCCTATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATCGGATTTTACGGCGAGAAAGAATGGTACTTTTTTTCTCCTCGGGACCGCAAATACCCCAACGGCTCACGGCCGAATCGGGCCGCCGGAAGTGGGTATTGGAAGGCCACCGGCGCCGATAAACCGATCGGGAAGCCGAAGGCGCTTGGGATAAAGAAAGCTCTGGTTTTTTACTCTGGAAAAGCCCCCAAAGGAGAGAAAACCAATTGGATCATGCACGAATATCGGCTGGCCAATGTTGACCGATCAGCCTCCAAGAAAAATAACAATCTGAGGCTTGACGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACGGGGGCACCGAAATCGGAGACTGAGGTGGTTTATAATTTCGAACACGAGACGAAGCCGGTGATTGAGAAGCTTGGGAACGAGCAATTGTTTATGGATAGTTCAGATTCGATGCAGAGGTTGCAGAGTGAGTCGAGCGGTTCAGAGCAGGTGGTTTCGCCGGACGTGAGGTGGGAGAGAGAGGTGCAGAGCCACCCGAAATGGAATGACATAGGCCTACAGCTTGAAAACGCGTTTGATTTTCAATACAATTACTTTGACGGCAATAACCTTTCGGTTGATGATCCTTTTGGGAGTGTTGAGTACCAAATGGGCCACGTCTCCCCCTTGCAGGATATGCTCATGGAAGCCCTATTGATGTGA 861 0.4855 MKSELELPPGFRFHPTDDELVNHYLCRKCAGQPIAAPIIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYSGKAPKGEKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNTGAPKSETEVVYNFEHETKPVIEKLGNEQLFMDSSDSMQRLQSESSGSEQVVSPDVRWEREVQSHPKWNDIGLQLENAFDFQYNYFDGNNLSVDDPFGSVEYQMGHVSPLQDMLMEALLM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2467g00011 286 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Vium2467g00011 286 FunFam NAC transcription factor 16 162 - -
Vium2467g00011 286 MobiDBLite consensus disorder prediction 202 221 - -
Vium2467g00011 286 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vium2467g00011 286 MobiDBLite consensus disorder prediction 202 218 - -
Vium2467g00011 286 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vium2467g00011 286 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Vium2467g00011 286 PANTHER NAC TRANSCRIPTION FACTOR 56 7 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2467g00011 Vium-Chr2467 114241 115850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2467g00011 1 281 NAC Transcription Factor Family AT1G01720 61.565 8.93e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2467g00011 NAM 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2467g00011 - - gmx:100814504 495.352