Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2466g00013 ATGGCTGTAGAGGAGTCTGAGTCTGCGATTGGAGAGCTAGAAAGAGAGGAGAACTTGATTGCTGCAGTAAGGCATATTGTGAAGGCACTAGGGCCGAATAAGACCCTTACCAGTGATGCCAAGAAAATTCTGGCTGATCTTGGGACCAGATTGTCTTCCATGTCCGTACCTAGTGAGAAGGAGGAGGGAAAACAAGGCCAAGGAGGGGAGGGCGGCAATGATCATGATGGTGGTGCTGATGACGAGGAGGAAGAGGAGGAGGATGATGAGGGTCTTAATGCTATTGAAGAAAGACTTAATGTGATTCAGGAGAAAATTATGAGATGGGAGGAGGATCAGTCCATGATTTGGGATTTGGGAACTGAAGAAGCGTCTGAGTATCTGAATGCTGCTAACGAGGCCCGCAGGTTGATTGAGAAGTTGGAAAGCTTGCATTTGAGGAAAGAGGATCAAGAGTACGAGTTTCTGCAGAGGGCTTATAGTGTTCTTCAAACTGCTATGGCACGCCTTGAAGAAGAATTCAGTAACTTGCTTATCCAGAACAGGCAACCTTTTGAGCCTGAATATGTCTCTTTTCGTTCCAGTGAGGAAGATGTTGTTGATGAGAACTCCATAATCTCTATAGGTGATGAATCGGTTGAGGAATCACTTCAAAGAGATAGTGTCAGCAGAGCGTCTGAGGAGCATATCATTAATTTGGTTCATCCAGCCGTGATCCCGGATCTCAGGTGTATTGCAAACTTACTTTTTGCTTCAAATTATTGCCAGGAATGTTCCAATGCTTATATCATTGTCCGGAGGGATGCCCTAGACGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTCAGCATCGAGGACGTTCTGAAAATGCAATGGGGTACTCTGAATTCCAAAATCAAAAGATGGATTTGGGCCGTCAAGATCTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTCAGTGACCAGATTTTTGGGGAGGGTGAGCCTGTCAGTCTATCTTGTTTTGTTGATGCATCTAAGGCTTCGATATTGCAGCTTCTGAATTTCGGTGAAGCCATGTCCATTGGCCCTCACCAACCTGAGAAATTGTTCCGTGTTCTTGACATGTACGAGGTTCTGCAAGACCTTATGCCAGACATTGATGCTTTGTACACAGATGAGGTTGGTTCCTCGGTTAAAATTGAATGTCATGAAGTTCTGAAGAGACTAGGCGATTGTGTGAGGGCAACATTTTTTGAATTTGAAAATGCCATTGCAACAAATGCATCATCAACCCCTTTTGTTGGTGGTGGGATACATCCTTTAACCAAATATGTTATGAATTATCTCAGAACCCTTACAGACTACACTGACATACTCAATCTACTTCTGAAGGACCAGGAAGAGGAAGAATCCATTTCGCTGTCACCTGACATGAGCCCTGGTACAGAAGAAGATAGCAGAAGCCATGGGTCTCCATGTAGAGTTTCCTCAATGGCCCTTCACTTCCGATCACTCGCATCTATCTTGGAAAGCAACCTTGAGGAGAAGTCTAAGTTATACAAAGAAGTCTCCTTGCAGCACTTGTTCTTGATGAACAACCTGCATTACATGGCTGAAAAGGTCAAGGGGTCTGAACTCAGGCTGGTGTTTGGAGATGAATGGATTCGAAAGCGCAATTGGAAGTTTCAGCAGCATGCAATGAAATATGAGAGGGCTAGTTGGAGTTCCATTCTTCTCTTACTAAAGGATGAAGGGATTCTTGTTCCGGGTACAAATTCGGTCTCAAAAAGTCTTCTTAAAGAGAGGCTACGAAGCTTCTACCTTGGTTTTGAGGATGTTTACAGGATCCAGACAGCTTGGCTTATCCCAGATATTCAGCTTCGCGAAGATTTACGGATTTCTATATCTCTCAAAGTAATCCAAGCTTATAGAACTTTTGTTGGAAGGCATAACAGTCACATAAGTGACAAAATCATTAAGTACAGTGCTGATGATTTAGAAAACTACCTTTTGGATTTCTTTGAAGGATCTCAAAAGTGGTTGCAAAATCCTCATAGAAGGTAG 2049 0.4353 MAVEESESAIGELEREENLIAAVRHIVKALGPNKTLTSDAKKILADLGTRLSSMSVPSEKEEGKQGQGGEGGNDHDGGADDEEEEEEDDEGLNAIEERLNVIQEKIMRWEEDQSMIWDLGTEEASEYLNAANEARRLIEKLESLHLRKEDQEYEFLQRAYSVLQTAMARLEEEFSNLLIQNRQPFEPEYVSFRSSEEDVVDENSIISIGDESVEESLQRDSVSRASEEHIINLVHPAVIPDLRCIANLLFASNYCQECSNAYIIVRRDALDECLFILEMERLSIEDVLKMQWGTLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVSLSCFVDASKASILQLLNFGEAMSIGPHQPEKLFRVLDMYEVLQDLMPDIDALYTDEVGSSVKIECHEVLKRLGDCVRATFFEFENAIATNASSTPFVGGGIHPLTKYVMNYLRTLTDYTDILNLLLKDQEEEESISLSPDMSPGTEEDSRSHGSPCRVSSMALHFRSLASILESNLEEKSKLYKEVSLQHLFLMNNLHYMAEKVKGSELRLVFGDEWIRKRNWKFQQHAMKYERASWSSILLLLKDEGILVPGTNSVSKSLLKERLRSFYLGFEDVYRIQTAWLIPDIQLREDLRISISLKVIQAYRTFVGRHNSHISDKIIKYSADDLENYLLDFFEGSQKWLQNPHRR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2466g00013 682 Gene3D Exocyst complex component Exo70 104 677 - -
Vium2466g00013 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 89 671 IPR004140 GO:0000145|GO:0006887
Vium2466g00013 682 MobiDBLite consensus disorder prediction 76 93 - -
Vium2466g00013 682 Coils Coil 681 682 - -
Vium2466g00013 682 MobiDBLite consensus disorder prediction 466 488 - -
Vium2466g00013 682 Coils Coil 92 112 - -
Vium2466g00013 682 Pfam Exo70 exocyst complex subunit 300 666 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium2466g00013 682 SUPERFAMILY Cullin repeat-like 113 670 IPR016159 -
Vium2466g00013 682 Coils Coil 124 180 - -
Vium2466g00013 682 MobiDBLite consensus disorder prediction 49 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2466g00013 Vium-Chr2466 159382 162255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2466g00013 12 682 EXO70 exocyst subunit family AT3G29400 48.035 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2466g00013 K07195 - gmx:100799102 1204.89