Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2466g00012 ATGGGGAAAAAACAGATCTTTTCTCATCTCTTCATTTGGGTTGTAATGATCTTGGTCGGAGCCTCTTGTGCTAAAGCAGGAGAAGAAGAAGAAGCTGTTGATAGGATTTTGGCACTCCCTGGCCAGCCTAAGGTGTCATTTCAGCAATTTTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCACAAAATCCTCTCACCAAACCTTTGGTCATTTGGCTCAATGGAGGTCCAGGATGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGACCATTTAGAATAAACAAAACAGCTTCTGGGCTATACATTAACAAGTTTTCATGGAACACTGTGGCCAACCTCTTGTTCTTGGAAGCTCCGGCCGGCGTTGGCTTTTCGTACACCAACCGTTCCTCCGACCTCCTTGACACCGGCGACCACCGCACTGCCCAAGACTCTCTGGAATTTGTTCTCCAATGGCTGGAACGGTTCCCCCGTTACAAACACCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCTAAGGAAATAATGAACCATAACGCAAAAAGCAAGCACCCCATCAATCTGAAAGGCATAATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGGACAGTGACATATTGGTGGAGCCATGCTATGATCTCGGACCAGACTTACCGGCAATTGATGAGTACATGTGATTTTCACCGGCAGAAGGAATCTGATGAGTGTGAGTCAGTGTATAGCTATGCCATGGATCAAGAATTCGGTAACATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGTAGTACCTCTCCCACCCGCCACACCATGCGCTTGCCTCACCGACCCCATAAGGCTTTTAGGCATTGGTCTGGCTATGATCCATGTACAGAAAAGTATGCAGAGATTTACTACAACAGACCTGATGTTCAGAAAGCCCTCCACGCTAACACAACTAGAATCCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCTGTTCTTCCCATTTATAGAGAGTTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGTGGGGACGTGGACTCAGTGGTACCTGTCACAGCAACAAGATATGCCCTTGCACAGCTTAAGTTGTCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAAGTGTACGAAGGAGTAACATTTGCAACAGTGAGAGGAGCAGGGCATGAAGTGCCTCTATTCAAGCCAAGAGCAGCCCTTCAGTTATTCACATCATTCCTTGCAGGAAAGCCTCTTCCCAAGTCCTGA 1401 0.459 MGKKQIFSHLFIWVVMILVGASCAKAGEEEEAVDRILALPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSSDLLDTGDHRTAQDSLEFVLQWLERFPRYKHRELYITGESYAGHYVPQLAKEIMNHNAKSKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSTSPTRHTMRLPHRPHKAFRHWSGYDPCTEKYAEIYYNRPDVQKALHANTTRIPYKWTACSEVLNRNWNDTDVSVLPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFTSFLAGKPLPKS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2466g00012 466 FunFam Carboxypeptidase 30 288 - -
Vium2466g00012 466 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Vium2466g00012 466 Gene3D - 319 356 - -
Vium2466g00012 466 Pfam Serine carboxypeptidase 41 459 IPR001563 GO:0004185|GO:0006508
Vium2466g00012 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Vium2466g00012 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Vium2466g00012 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Vium2466g00012 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Vium2466g00012 466 Gene3D - 366 460 - -
Vium2466g00012 466 Gene3D alpha/beta hydrolase 31 288 IPR029058 -
Vium2466g00012 466 FunFam Carboxypeptidase 366 460 - -
Vium2466g00012 466 SUPERFAMILY alpha/beta-Hydrolases 34 464 IPR029058 -
Vium2466g00012 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 447 IPR001563 GO:0004185|GO:0006508
Vium2466g00012 466 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Vium2466g00012 466 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2466g00012 Vium-Chr2466 150309 156268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2466g00012 324 463 Calmodulin-binding Proteins AT2G22960 31.206 8.85e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2466g00012 K16297 - gmx:100807680 889.797