Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2466g00004 ATGGCTTCAAATAATGTCCTAAACGCGAGTGAGATCTTTGAAGGTCAAGTTCACTTGTACAAACACTTGTATGCTCATGCAGTAGATTGTATGAGTATTAAATGGATGATTGAGCTTGGCATACCAGACATAATCCACAACCATGGTCAACCCATTTCATTTCCAAAGTTGGTTTCCATTCTACAAATTCCACCAAGTAAAGTTAGAGGCGTGAAGAGTCTGCTACGCTACCTGGCACACAATGGATTCCTTCAGATTCTAAGAGTCCATCACAGCACAGAAGAAAACGAAGCATATGGTCTAACACCTGCATCACACCTTCTTGTCAAAGGCACTGACTTTTGTCTTGCACCAATGGTAAAGGGTTTAACTGACCCAACTTTATCAGATATGTGGTCTCACTTGAAGAAGTGGACTTATGAGGATGATCTTACACTGGTTGATGTCTCCGTAGGATCAACTATGTGGGACTTTCTTGGTAAAAACCCAGCATTGAACGAGTCGTTCAATGAGGCAATGGCCAGTGATTCTCAGATGATGAACCTGGCATTAAGAGGTTGCAATTGGGTGTTCGAAGGAGTGGAGTCCATTGTGGATGTCGGAGGTGGAACCGGAACCGCAGCCAAGGCTATCTGCGATGCATTTCCTAACGTGAAGTGCACTGTATTGGATCGTCCACAGGTTGTGGAGAAGTTGTCGGGAACCAACAATTTGACATATGTTGGCGGTGACATGTTCGAATCTATTCCCAAGGCTGATGCAGTTCTACTCAAGTGGATTCTGCATGATTGGAGTGACAAGGATTGTAAGAAGATATTAGAGAATTGTAGAGAAGCGATTTCAGGTAGAGGCAAAAGAGGAAAAGTAATTGTGATAGAAAATGTGATAAACGAAGGCCAAGATGAGCAGGGAGTTACTGGACTAAAGCTCGTCATTGATGTTCACATGACATGTCTTCTTAATGGAAAAGAAAGAAGAGAAGAAGAATGGAAGAAACTGTTCGTGGAAGCAGGGTTTCAAAGCTACAAAATATCTCCTTTCACAGGACATTCGTCTCTTATTCAGATCTATCCTTGA 1077 0.4243 MASNNVLNASEIFEGQVHLYKHLYAHAVDCMSIKWMIELGIPDIIHNHGQPISFPKLVSILQIPPSKVRGVKSLLRYLAHNGFLQILRVHHSTEENEAYGLTPASHLLVKGTDFCLAPMVKGLTDPTLSDMWSHLKKWTYEDDLTLVDVSVGSTMWDFLGKNPALNESFNEAMASDSQMMNLALRGCNWVFEGVESIVDVGGGTGTAAKAICDAFPNVKCTVLDRPQVVEKLSGTNNLTYVGGDMFESIPKADAVLLKWILHDWSDKDCKKILENCREAISGRGKRGKVIVIENVINEGQDEQGVTGLKLVIDVHMTCLLNGKERREEEWKKLFVEAGFQSYKISPFTGHSSLIQIYP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2466g00004 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vium2466g00004 358 Gene3D - 2 108 IPR036388 -
Vium2466g00004 358 FunFam O-methyltransferase ZRP4 110 358 - -
Vium2466g00004 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vium2466g00004 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 354 IPR029063 -
Vium2466g00004 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 358 IPR016461 GO:0008168
Vium2466g00004 358 Pfam O-methyltransferase domain 132 340 IPR001077 GO:0008171
Vium2466g00004 358 CDD AdoMet_MTases 197 293 - -
Vium2466g00004 358 PANTHER O-METHYLTRANSFERASE 19 343 IPR016461 GO:0008168
Vium2466g00004 358 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vium2466g00004 358 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2466g00004 Vium-Chr2466 67349 68815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2466g00004 7 344 Monolignol Biosynthesis Gene Families AT5G54160 31.412 1.70e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2466g00004 K22588 - gmx:100811609 521.546