Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2466g00003 ATGGCTTCCCACAACCTCAAAATCCATGAACAGTGCACTGTTGCGCCTCCCTCTGCACCCCAAACATCCCTCCCTCTCGTATTTTTCGACCTGTTCTGGCTCAGGTTTCATCCTGTAGAACGCATCTTCTTCTATTCCCTCCCTGTAACCCATTCAAACCCATCCATTTTCTTCGCCCAAGTTGTTCCGAAGCTCAAAAATTCACTCTCTCACACCCTCCAACACTTTTCCCCTCTCGCCGGCAACGTCCTGTGGCCCCATGGTTCTTCAAACCCCGTCGTTCAGTACAACCCAGGCGACGCTGTTTCAGTGGTGCTTGCAGAATCCGAAGCCGACTTCGACCACGCGTTGGACAACGCACCTAAAGACGCATCAGAGTCACGTTGTTTGGTGCCCCACTTGGAATCTTCGGATTCTCATGCCTCTGTTATGGCTCTCCAAATCACTCTGTTCCCTAATAGAGGGTTCGCCATAGGAATCACCACCCACCACGCCGTCCTTGACGGAAAATCTTCAACTCTTTTCATCAAAGCCTGGGCTTCTCTGTGTAAAACCAATGATGATTACTCTGAGTCATCACCATCCTTGGCTCCAGAATTGGAGCCGTTCTTTGACAGAACAGTCATCAAAAGCCCAAGTGAGTTAGGGTTCGACTTAGAAATCGATTTGGCTGAGATGTTAACCAAATTGTTCCCAAGTGAAAACAGCGACGGAAGATGCTTGAAGCTTCTACCTTTCCCTCCAAGATTGGAAGAACATGTTCGAGGGACATTCGTGCTCACGGGACCTGATTTGGAGAGAATAAAGAATAGGGTGCTGTCCAAGTGGGACAGTGTAGACATAGTTGAAGCAGAATCAAACTCAAAACCAACCAAACTGTCAACTTTTGTTCTAACTTGCGCTTATACTTTTGTTTGCATTGCCAAGGCCTGGCACAGAGTTGAAAAGGAGAAAAATAAGTTTGCTAGTGGGTTTACTATGGATTGCAGGGCCAGGTTGGAGCCTCCAATTCCTGAAAACTACTTTGGGAACTGTGTGTGGGGGAGTATGGTGGATGCGAAGCCATCGGCATTTCTAGAGGAAGAAGGGTTGGTTAATATTGCGAAAAGTACTCATAGTAAAATAAAAGAGATGCTAGATAAGGGTGTTTTTCATGGGATAGGTAATGCGGCTCCTAGATATGCAGCTTTGGCAAAGGAGGGAGTTGAACTCTTTGGAATTGCAGGGTCTAACCGTTTTGGGGTTTATGAGAATGATTTTGGTTGGGGAAAGCCTTCAAAGGTGGAGATAGCATCGGTGGATAGAGCCATAACAATTGGATTGGCAGAAAACAGAGATGAGAAAGTCGGTGTTGAAATTGGGATTGTTCTGAAGAGACCAGTGATGGAACTGTTTGCCACTTTGTTTCGTGGAGGGTTGTCAGATGAGTGA 1431 0.4661 MASHNLKIHEQCTVAPPSAPQTSLPLVFFDLFWLRFHPVERIFFYSLPVTHSNPSIFFAQVVPKLKNSLSHTLQHFSPLAGNVLWPHGSSNPVVQYNPGDAVSVVLAESEADFDHALDNAPKDASESRCLVPHLESSDSHASVMALQITLFPNRGFAIGITTHHAVLDGKSSTLFIKAWASLCKTNDDYSESSPSLAPELEPFFDRTVIKSPSELGFDLEIDLAEMLTKLFPSENSDGRCLKLLPFPPRLEEHVRGTFVLTGPDLERIKNRVLSKWDSVDIVEAESNSKPTKLSTFVLTCAYTFVCIAKAWHRVEKEKNKFASGFTMDCRARLEPPIPENYFGNCVWGSMVDAKPSAFLEEEGLVNIAKSTHSKIKEMLDKGVFHGIGNAAPRYAALAKEGVELFGIAGSNRFGVYENDFGWGKPSKVEIASVDRAITIGLAENRDEKVGVEIGIVLKRPVMELFATLFRGGLSDE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2466g00003 476 PANTHER - 6 475 - -
Vium2466g00003 476 Pfam Transferase family 18 466 - -
Vium2466g00003 476 Gene3D - 250 475 IPR023213 -
Vium2466g00003 476 Gene3D - 6 226 IPR023213 -
Vium2466g00003 476 SUPERFAMILY CoA-dependent acyltransferases 289 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2466g00003 Vium-Chr2466 33428 35197 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2466g00003 6 425 Monolignol Biosynthesis Gene Families AT5G48930 25.115 2.07e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2466g00003 - - gmx:100815354 704.131