Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2466g00001 ATGGCTTCCCACAACCTCAAAATCCATGAACAGTGCACTGTTGCTCCTCCCTCTGCACCCCAAACATCCCTCCCTCTCGTATTCTTTGACCTGTTCTGGCTCAGGTTTCATCCTATAGAACGCATCTTCTTCTATTCCCTTCCTGTAACCCATTCAAACCCATCCATCTTCTTCGCCCAAGTTGTTCCAAAGCTCAAAACTTCACTCTCTCACACCCTCCAACACTTTTCCCCTCTCGCCGGCAACGTCCTGTGGCCCAATGGCTCTTCCAACCCCGTCGTTCAGTACACCCCAGGCGACGCTGTTTCAGTGGTGCTTGCAGAATCCGAAGCCGACTTCGACCACGCGTTGGACAACGCACCTAAAGACGCATCAGAGTCACGTTTTTTGGTGCCTCACTTGGAATCCTCTGATTCTCATGCCTCTGTTATGGCTCTCCAAATCACTCTGTTCCCTAACAGAGGGTTCGCCATAGGAATCACCACTCACCACGCCGTCCTCGACGGAAAATCTTCAACTATCTTCATCAAAGCTTGGGCTTCTCTGTGCAAAACCAATGATGATTACTCTGAGTCATCACCATCTTTGGCTCCAGAATTGGAGCCTTTCTTTGACAGAACAGTCATCAAAACCCCGAGTGAGTTAGGGTTCAACGCATCACTCGATATTGCTGAGCTCGCAACCAAAAATATCCCAGGTGAAAACAGCGACAGCAGATGCTTGAAGCTTCTACCTTTCCCTCCAAGATTGGAGGATGAGGTTCGAGGGACATTCGTGCTAACGGGAGCAGATTTGGGGAGATTAAAGAATAGGGTGCTGTCCAAGTGGGACAGTGTAGACACAGTTGAAGCAGAATCAAACTCAAACTCAACGATTTGTTCAAAACAAACCAAAGTGTCGACTTTTGTTCTAACTTGCGCTTATGCTTTTGTTTGCATTGCCAAAGCCTGGAACGGAGTTGAAAAGGACAAAAATAAGTTTGCTTGTGGGTTCATTGTGGATTGCAGGGCCAGGTTGGAGCCTCCAATTCCTGAAAACTACTTTGGGAACTGTGTATGGGGGAAGATGGTGGTTGATAAGCCATCGGCATTTATAGAGAAAGAAGGGTTTGTTATTATTGCGAAAAGTATTCATAGTAAAATAAAAGAGATATTAGATAAGGGTGTTTTTCATGAAGCAGATCTAGTTGCTTCTCGATATGCAGCTATGGCAGAACAGGGAGTTCAGATGTTAGGAACTGCGGGGTCTAACCGTTTTGGGGTTTATGAGAATGATTTTGGTTGGGGAAAGCCTTCAAAGGTGGAGATAGCATCGGTGGATAGAGCCCTAACAATTGGATTGGCAGAGAACAGAGATGAGAAAGTCGGTGTTGAATTTGGGATTGTTCTGAAGAGACCAGTGATGGAACTATTTGCCACTTTGTTTCGTGGAGGATTGTCAGATGAGTGA 1449 0.4624 MASHNLKIHEQCTVAPPSAPQTSLPLVFFDLFWLRFHPIERIFFYSLPVTHSNPSIFFAQVVPKLKTSLSHTLQHFSPLAGNVLWPNGSSNPVVQYTPGDAVSVVLAESEADFDHALDNAPKDASESRFLVPHLESSDSHASVMALQITLFPNRGFAIGITTHHAVLDGKSSTIFIKAWASLCKTNDDYSESSPSLAPELEPFFDRTVIKTPSELGFNASLDIAELATKNIPGENSDSRCLKLLPFPPRLEDEVRGTFVLTGADLGRLKNRVLSKWDSVDTVEAESNSNSTICSKQTKVSTFVLTCAYAFVCIAKAWNGVEKDKNKFACGFIVDCRARLEPPIPENYFGNCVWGKMVVDKPSAFIEKEGFVIIAKSIHSKIKEILDKGVFHEADLVASRYAAMAEQGVQMLGTAGSNRFGVYENDFGWGKPSKVEIASVDRALTIGLAENRDEKVGVEFGIVLKRPVMELFATLFRGGLSDE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2466g00001 482 SUPERFAMILY CoA-dependent acyltransferases 294 448 - -
Vium2466g00001 482 Pfam Transferase family 18 472 - -
Vium2466g00001 482 Gene3D - 6 229 IPR023213 -
Vium2466g00001 482 Gene3D - 250 481 IPR023213 -
Vium2466g00001 482 PANTHER - 6 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2466g00001 Vium-Chr2466 3420 5127 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2466g00001 6 431 Monolignol Biosynthesis Gene Families AT5G48930 24.541 5.14e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2466g00001 - - gmx:100815354 680.248