Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2463g00003 ATGGGCGATAAGGTGGAGACGCTTGGGAGATTAGCCCAGTGGAAAATCGACAACTTTGGACTTTCTTCCTACAAAAAATCTGACCCTTTCAAGGTCGGAATCTGGAACTGGTACTTTTCAATTGTGAGGAATAAGTACTTCTTCATACATCTTTTTCCGGAACCTTCTACGGTTTCTAAGAATCAACCACCGTTTGCTCGATTCATTCTTCGAGTCTCCAATGCTGGCTCATCTCGCAGCTTTCATATTTCCCCTGTTCAAGAAAAGCTGCTCAGGTCACATGATGACTTTGTCTGGTCTGTGGAAACAACTTTTGTTGGTCGCTACATCATTGATGTTGAGTTTCTAGACCTGAAGATAAATGGAGAAGAAACTAGTTCTGTATGGCCACCTGATGAAAATGTGCAATCCATCGCATCCCAAAGTAGCAGTATTCGTGGCCTCTCTCGCATGCTTGACGAGGCTATACATGCAGACCTAACCATCATCACTGCTGATGGCTCATTGAGAGCTCATAAGGCAGTTCTCTCAGCAAGTTCTCCAGTGTTCCAGAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCTTCTACAATCCATATAGAAGACATGTCACTTGAATCCTGCACGGCGCTTCTTAGTTTCTTGTATGGAACAATCAAGAAAAAAGATTTCTTGGAACACCGGCTTGCATTACTTGGAGCTGCTAATAAATATGACATTGGTGGTCTCAAAGACATCTGTGAGGAAAGCCTTGTGGAAGGTCTTCACTCAAGAAATGTTCTTGAGATGCTAAATGAGGCTTGGTTATATCAATTGCTCAAGTTAAAGAAAGGGTGTTTTGTGTTATTATTTGAATTTGGTAAGGTACATGATATGAAGGATGAAATGAATAATTTTTTACAACATGCAGATAGGGAGCTAATGGTTGAGATGTTTCAGGAGTTGCTTTCAGTTTCGAACCCATGTATAAGTTAA 978 0.411 MGDKVETLGRLAQWKIDNFGLSSYKKSDPFKVGIWNWYFSIVRNKYFFIHLFPEPSTVSKNQPPFARFILRVSNAGSSRSFHISPVQEKLLRSHDDFVWSVETTFVGRYIIDVEFLDLKINGEETSSVWPPDENVQSIASQSSSIRGLSRMLDEAIHADLTIITADGSLRAHKAVLSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALLSFLYGTIKKKDFLEHRLALLGAANKYDIGGLKDICEESLVEGLHSRNVLEMLNEAWLYQLLKLKKGCFVLLFEFGKVHDMKDEMNNFLQHADRELMVEMFQELLSVSNPCIS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2463g00003 325 CDD MATH 14 84 IPR002083 GO:0005515
Vium2463g00003 325 ProSiteProfiles BTB domain profile. 158 217 IPR000210 GO:0005515
Vium2463g00003 325 Pfam BTB/POZ domain 151 254 IPR000210 GO:0005515
Vium2463g00003 325 SUPERFAMILY POZ domain 143 254 IPR011333 -
Vium2463g00003 325 Gene3D Potassium Channel Kv1.1; Chain A 132 284 IPR011333 -
Vium2463g00003 325 PANTHER OS08G0495500 PROTEIN-RELATED 3 322 IPR044714 -
Vium2463g00003 325 CDD BTB_POZ_ZBTB_KLHL-like 157 239 - -
Vium2463g00003 325 SMART BTB_4 158 256 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2463g00003 Vium-Chr2463 18930 21627 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium2463g00003 BTB 4.8e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2463g00003 K10523 - gmx:100787262 551.592