Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2461g00002 ATGGAATCCCCCGTTGATGTTGTGCCAGCTGCAAAACGCCCCCGATCAATGGGATTTTTTCCTGACGCTGGTAGAGACAAAAGACTGAAAATTTCAAGTTATAGCCTGCCATACTCAGCACATGATAAGACTTCGAATGTTGTTGATTACAACAATCCATTTGCAATATCTGATGTTCTGGATAATTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAAGACCTTATAGCCCAAAAAATGAAAATATTGGGCCCTTACTTTGTTAAATATCCCATACTTGTGGATCAATGGGTGAAAGCAATAAAGAAACATGATGAAGAAACTCCTAAGTTGGAAAATCAACTAGTTACTGTTTCGACGGATCAAAATGTTATAGATCTTGAGGAGGAACACACCAGAAAGGATGTCCCTGCAACACAAGATCCTATTGTGATTATTGATTCGGATGATGAAGATGATGGAGATGAAAAATCTATGGTCCCATTTCATGAAGTTGTGTTGCCGACACTAGTTGCACCGTCTCCTGCATTGAAGATAACTGGGTATCTACCTGCCATTCCTTACCTGGAAGAAAGAGATCTAATAATTGAGACAAGTATGGAGGATAAACCTAACAATACTCAGAACAATAGAGGCAGTTATGTTGGTGTACAGGAAGAGGAAGAAGATGAGCTTGATACTGAAGATGACGGTCTAGGAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGTTGATCTCCAGCCAGATGAAGAAGCAGAAGAAGACTATGATGATGATGATTGTGATCATTCTTTTGTCTTAAAAGACGATCTTGGTTATGTTTGTCGGGTTTGTGGAATTATTGACCGAAAAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGCAGCACAAGAACTTATGCATCTGATTCATGGAATACCAAGAAAACAGATGCATTTGGAATTAATGTTGTTAAAGATGACCTCGTAGTTACTGAAATCCCAGCACACCCTAGACACATGAAACAGATGAAGCCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCAAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAAGTGGAGAACATACCTCTATATGACTTCTACACAGTGAAGGCAGACAGTAGAAGTCAACAACTTGAAGTGCTGAATCAATGGAGGGAGAAGAAGAGTATTCTTTTCTTAGGATACAAACAGTTCTCCACTATTGTCTGTGATAATGGGAACGATATATCATTACGTTGCCAAGATATTTTACTGAAAGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTTCAATCCCTTGCAAAAGTTCACACACCTAGAAAAGTTGTTCTGTCGGGAACTCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTCTAGATCTTGTTCGGCCGAAATTTTTGAAGATGGAAACATCAAAACCTATCGTGAGGCGCATCCAAAGTAGAGTTCATATACCAGGGATGAAAGGATTCTCTAATTTAGTTGAAAACACTTTGCAGCAGGACACTGATTTTAAAACGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGTCTAGTGGATTTTACTTTAATGCTCACTCTTAGCCCTAGCCAGAAGACTGAAGTAGCAAAAATAAAAAAAATATCTACAAGAAAGTTCAAGATATCTTCCGTAGGAAGTGCTGTCTATCTGCATCCTAAACTAAAACCGCTAGCAGAAAAAAATTGTGGTAAAACTCCTATATCTGATTATGTAATGGATGATTTGGTAGATAAACTGGATATTAGAGATGGTGTGAAGTCAAAATTTTATCACAACATGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCCTTGAAATATTTAGAAAGGTTGACTATTAACTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGATTCAACTCCTGAGCACCGAGAATGGTCCATGGAAAAATTCAACAATTCTCGTGAAGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGGGCCTCCCGCATAATTATCTTGGACGTTCATCTCAATCCATCAGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGAAGAAGAAGGTGTTTGTGTATCGTTTAGTATCAGCTGATTCTCCAGAAGAAGAAGATCACCATGCTTGTTTCAAGAAAGAACTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATGAATTTCTTGAAAGTCCTCTGTTAGGGGAGAATGTAAAAGCTTTATATAGAAGGTGA 2646 0.387 MESPVDVVPAAKRPRSMGFFPDAGRDKRLKISSYSLPYSAHDKTSNVVDYNNPFAISDVLDNLESGKFGSVTKDIEDLIAQKMKILGPYFVKYPILVDQWVKAIKKHDEETPKLENQLVTVSTDQNVIDLEEEHTRKDVPATQDPIVIIDSDDEDDGDEKSMVPFHEVVLPTLVAPSPALKITGYLPAIPYLEERDLIIETSMEDKPNNTQNNRGSYVGVQEEEEDELDTEDDGLGDIWKEMSMAIECSKDVSVDLQPDEEAEEDYDDDDCDHSFVLKDDLGYVCRVCGIIDRKIETIFEFQYKVKRSTRTYASDSWNTKKTDAFGINVVKDDLVVTEIPAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVENIPLYDFYTVKADSRSQQLEVLNQWREKKSILFLGYKQFSTIVCDNGNDISLRCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVHTPRKVVLSGTLYQNHVREVFNILDLVRPKFLKMETSKPIVRRIQSRVHIPGMKGFSNLVENTLQQDTDFKTKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTLMLTLSPSQKTEVAKIKKISTRKFKISSVGSAVYLHPKLKPLAEKNCGKTPISDYVMDDLVDKLDIRDGVKSKFYHNMLNLCESAGEKLLVFSQYLLPLKYLERLTINWKGWSLGREIFVISGDSTPEHREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHHACFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDEFLESPLLGENVKALYRR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2461g00002 881 Gene3D - 317 566 IPR038718 -
Vium2461g00002 881 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 213 880 IPR044567 GO:0080188
Vium2461g00002 881 Pfam Helicase conserved C-terminal domain 697 804 IPR001650 -
Vium2461g00002 881 SMART ultradead3 345 554 IPR014001 -
Vium2461g00002 881 Gene3D - 611 863 IPR027417 -
Vium2461g00002 881 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 857 IPR001650 -
Vium2461g00002 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 543 IPR027417 -
Vium2461g00002 881 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 541 IPR014001 -
Vium2461g00002 881 MobiDBLite consensus disorder prediction 205 232 - -
Vium2461g00002 881 Pfam SNF2-related domain 369 647 IPR000330 GO:0005524|GO:0140658
Vium2461g00002 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 843 IPR027417 -
Vium2461g00002 881 SMART helicmild6 720 805 IPR001650 -
Vium2461g00002 881 CDD SF2_C_SNF 694 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2461g00002 Vium-Chr2461 10670 18291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2461g00002 702 833 RAD5 or RAD16-like Gene Family AT5G43530 34.091 1.61e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2461g00002 SNF2_N 2.2e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2461g00002 K10875 - gmx:100780454 1394.02