Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium245g00002 ATGAGAGAAGAAGAATCAAATTGGTTCGAAGAGTTACCTTCACCGGAGGAACTCATGCCCTTATCCCAAACCCTAATAAGCCCTCATCTTGCCGTAGCTTTTGACATAACAAACTCTTCCCACCACCAATTTCCACTTCAGCCACCTTCCGCCGCCGAGGACGAACCGGCGCGAACACTCAAGCGGCCCAGACTCGTGTGGACCCCACAGCTCCACAAGCGCTTCGTCGATGCCGTCGCCCACTTGGGGATCAAGAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGTTTGACCCGGGAAAACGTCGCCAGCCACCTCCAGAAATACCGCCTCTACTTGAAGCGCATGCAGGGTTTGGCCGGAGGTTCCGCCGCCGACTCCGCCACGGACCACCTATTCGCCAGCTCGCCTGTGCCGCCGCACTTCCTGCACCCCGCTACCCGCCCGGCCTCTGACCATTACCTGCCCTTTGTGCCGGGGTTGCATCAGCACCGCAATCACCACCACCACCAGCACATGGCGGTGCCTGCTCATTTTGGCTCGCCACGGAATGCGCACTTTGAACTCCCCGTTCTGTCGAGGATGGGAGCTTCGGTGCCGGGTTACGTGGAGGATGTGGAGTCGGGAGGGAGGAAGGTTCTTACTTTGTTTCCAGCTGGAGATGATTGA 681 0.583 MREEESNWFEELPSPEELMPLSQTLISPHLAVAFDITNSSHHQFPLQPPSAAEDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLAGGSAADSATDHLFASSPVPPHFLHPATRPASDHYLPFVPGLHQHRNHHHHQHMAVPAHFGSPRNAHFELPVLSRMGASVPGYVEDVESGGRKVLTLFPAGDD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium245g00002 226 FunFam Two-component response regulator 58 121 - -
Vium245g00002 226 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 179 IPR044841 GO:0003700|GO:0006355
Vium245g00002 226 Gene3D - 59 121 - -
Vium245g00002 226 SUPERFAMILY Homeodomain-like 59 119 IPR009057 -
Vium245g00002 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 118 IPR017930 -
Vium245g00002 226 NCBIfam myb-like DNA-binding domain, SHAQKYF class 63 115 IPR006447 GO:0003677
Vium245g00002 226 Pfam Myb-like DNA-binding domain 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium245g00002 Vium-Chr245 13361 14779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium245g00002 1 226 G2-like Transcription Factor Family AT5G05090 52.747 2.86e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium245g00002 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium245g00002 - - vra:106771029 437.187