Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2458g00004 ATGTTCCACCGCAGCACAAAGTTCGCACTGCTTCTCACCATCTTCGTTTTCTGTTCAACCATCGCCCGAACCAGCAGCAACTGCCAGCCCAGTTGCGGACAACATTCCCTAAAATACCCTTTTGGGTTCTGTTCTGACAGCAAAGTCAAACTAAACTGCAGCAGCGACAGTACGAAAGTCAAAATCGGCGAGTTCGAGGTTCAGAATATAACCTCTGATAGCATATTCGTGAGTCTTCCGGTGAAGTGCAACCGCAGCTTGCGAATCATAGACCCTCTTTTCGGCGTCAACTTTGCTCCTACGTTCAACAATAGCTTTCTGTTGCAGGGTTGCAAGTCCAAACAGAATGGCTGCGATACTACCCCATCGAGTTTCGTTGGCGAGCACGGCCCAGTGGAGGGGTGTGATTGGGAAAACAAAAGTGAAAATTTTATTTGCTTCAAGCGGTTGCCGCGTAATAATAGTTCGCGTGAAGATGTGCTCCAGAGTGATTTGAAAGGAATTGGGTGTAGCTTCTTGTTTTCTGCCATTGCTTATGATAAGAGTAAAGGAAAAGAGCTTTCGCTACAATTACAGATGCTTGAGTTGGGGTGGTGGCTCAAAGGGCCCTGTAATTGCTCCAATAATGCATCCTGCACGGTGGTCAAGCTTGCCACAGGAGATCCAGGCTACCGGTGCCGGTGCCATGAAGGTTTCGTAGGTGACGGTTTCAAAGACGGCGATGGCTGCCGGAGTACCTTTTCAGCAGTTCCTCAATGCAAACCTTCAACACTATGGCTTTGCAGATGTAGAAAAGCAATCAAAATCGGTGTCCTTGTTGGAGGGGTGATAATTGTGGCTACCCTGGTGGTTGCTCTGTCTCTTCTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGAAAACAAGTTACAGTAAAGCGCTTATTACGAGAAGCTGCGGGCGACTCTATTGTTCCTCTATATCCGTACAAAGAAATAGAAAGAGCCACAAGTTTTTTCGATGAAAAACATAGGCTGGGAACTGGGGCATTTGGCACAGTTTATGCTGGACACCTTCACAACGATGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAATAGTGTTGACCAAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTTCGCCTCCTAGGTTGCTGCATAGAAGGTGGAGATCAGATACTTGTGTATGAGTATATGCCCAATGGAACACTATCTGAACATTTGCAAAGGGAGAGGGGCGGAATACTTCCATGGACAACAAGACTCACCATTGCTACAGAAACTGCTAATGCTATAGCATATCTCCATTCTGCCATTAACCCTCCGATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTACAGTTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGAATGTCAGAAACATCACATATCTCAACCGCCCCACAAGGGACCCCGGGCTATGTTGATCCCCAATACCACCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAAGTGCAATGAAAGTGGTTGATTTTTCGCGACCTACAAGTGAAATCAATTTGGCTGCACTTGCAGTTGAAAGGATTAGGAGGGGTTGTCTCGATGATATCATTGATCCCTTCCTTGAGCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTTGAAGTTATTAGACGCAGTGAGTGGGAAGCTTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTTTGTTCATCGCCTCGAATAGGAAGAGAGAATTCATTGGTTGGTGTTAGTTTTGAGAGAGTTGCAGGGCAAGGGAGTGAGACATTGATTGTTCCACCCAAGAGTGAAATGTTTTTGCAATCAGTGAAGGAAGTGAAGGACAACTCTCCTGTATCTGTGCATGATGCTTGGCTCAGTGGAACTAGCTCACCTTCAACAAATTGCTAG 2094 0.4546 MFHRSTKFALLLTIFVFCSTIARTSSNCQPSCGQHSLKYPFGFCSDSKVKLNCSSDSTKVKIGEFEVQNITSDSIFVSLPVKCNRSLRIIDPLFGVNFAPTFNNSFLLQGCKSKQNGCDTTPSSFVGEHGPVEGCDWENKSENFICFKRLPRNNSSREDVLQSDLKGIGCSFLFSAIAYDKSKGKELSLQLQMLELGWWLKGPCNCSNNASCTVVKLATGDPGYRCRCHEGFVGDGFKDGDGCRSTFSAVPQCKPSTLWLCRCRKAIKIGVLVGGVIIVATLVVALSLLCYFTRRRSSWLRKQVTVKRLLREAAGDSIVPLYPYKEIERATSFFDEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDQVINEIKLLSSVSHPNLVRLLGCCIEGGDQILVYEYMPNGTLSEHLQRERGGILPWTTRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMSETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIISAMKVVDFSRPTSEINLAALAVERIRRGCLDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEVIRRSEWEALEETICTASSVGSVCSSPRIGRENSLVGVSFERVAGQGSETLIVPPKSEMFLQSVKEVKDNSPVSVHDAWLSGTSSPSTNC 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2458g00004 697 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Vium2458g00004 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Vium2458g00004 697 Gene3D Laminin 204 238 - -
Vium2458g00004 697 ProSiteProfiles Protein kinase domain profile. 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2458g00004 697 SMART serkin_6 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2458g00004 697 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 690 IPR044652 GO:0004672
Vium2458g00004 697 Pfam Protein kinase domain 335 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2458g00004 697 FunFam Wall-associated receptor kinase-like 14 301 409 - -
Vium2458g00004 697 Gene3D Phosphorylase Kinase; domain 1 296 409 - -
Vium2458g00004 697 Gene3D Transferase(Phosphotransferase) domain 1 410 627 - -
Vium2458g00004 697 FunFam Wall-associated receptor kinase-like 20 410 619 - -
Vium2458g00004 697 SUPERFAMILY Protein kinase-like (PK-like) 317 608 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2458g00004 Vium-Chr2458 60309 65081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2458g00004 1 696 Receptor kinase-like Gene Family AT2G23450 53.824 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium2458g00004 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2458g00004 - - gmx:100810861 1073.15