Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2457g00006 ATGATGTTTCTTCTTCTTGTGAGGCTTGTTGTTTTGCAAGGCTTTCTAATACCAACCTGCTATTGCCAGATCAATACTCCTCAGAATATTGAAACATTTTATCCAATCCAAACTTCGGAATCACCCCTCCCAATCCAACCTTTTCAGCCACAGGCATCACCACCATCATCAGGACCAGTGGCTGCAACAAAAGCCTCTTCATCAAACAGTAAGGTAGGAACAGCAGTGGCTGCAACTGCAGCAAGCACTCTTGTTGTTTCTGGTTTGGTTTTCTTCTTTGTTAGAAGGTGCTCCAGAACAAGGAAGAGAAAGGAGACAAGTAAGAACACCGCTTCTGCTGCGGAAAGGCATGTTTCACCTCAGGTGGAGGTGTTTGAGAGAATGGAAGGAAACGTGAAGGGACTGATCGTTGATGAGGATGGTTTGGATGTGCTTTATTGGAGAAAGCTTGAAGGTAAAAAGATACCACAAAAGGATTTTCAAAGGGAGGTGTTGGATAGTCCCAAAGATGAAGAAGGTGATCATGAGGGAAATCCAGGGAAGATAACTGAATTCATTCAAGAAACTCCTCTTCTTAGAGAGAAATCTTCAACTTCCCACATGAACATATTTCTTCCAGAAGAGTCCTACACAATCATGAGAATTCCACCTCCTGCTCCTCCTCCCACTGTTCCTTCATCGGTTGGAAGCTCTCCTACACATTCATCTTCTCCTTCCTTTACCCCTTCATCACCAAAACCAATCTCCACTTTTTTCTCATCAATTCCAAACATTACAAATTCTGCAACACCATTGGCCCCTCCAAAAGTACCTGATAAAAAGAATGAAGCTCCGATACCAGCATCAGCACCACCACCTCCTCCACCAATCATAGATGAAAAGAAGTCACCACAACCACCTCCTCCTCCTCCTCCAATTCCAAAAATCATGAACTCAGCAGTAGCATCTCCTCCTCCTCCTCCTCCTCCAATCCCTCCTAGAAAGAGTCCAGCACCACCACCTCCTCCACCAAAGGCAAGTGGTTTGAAGTCATCATCAAAACCGCCACCTAATCCAATTGAAAGAGCAGCAGGTACCACAAGTAAGCAAGGAGACACTTCACCTGAGGTGAAACTAAAGCCACTACATTGGGATAAGGTGAATACAAACCTTGATCATTCTATGGTGTGGGACAAAATGGACCGTGGTTCTTTCAGGGTTGATGATGATCTTATGGAAGCTCTCTTCGGGGTAGTCGCCACCAACCGAAATGATAATGCCCCCAAAGAAAATAACTCAACGAGTTCTAGCAAGGATGCTTTGGCTCTATCATCAAATGCCTTCCTTCTTGACCCAAGAAAATCACAAAACATTGCTATTGTTTTGAAATCTTTGACAGTCTCTCGTAAAGATATTATTGAAGCACTCATTGATGGTCATGGCCTTAATATAGAAACCATTGAAAAGCTTGGTAGAGTAGCCCCAACAGAAGAAGAACAATCACTTGTACTTGCATATGAAGGAGACCCTTCAAAACTTGCTGAAGCCGAAACTTTCCTACGCCACATCCTCAAAGCTGTTCCTTCAGCTTTTAAGCGATTGAATGCCTTGCTATTCAGGTTGAATTATGACTCCGAGGTTCTAGAAATCAAGGAGTTTCTGCAGACCCTTGAAATGGGGTGCAAGGAGCTTCGAAAACAAGGAATCTTTGTCAAACTTCTTGAAGCTGTGCTTAAGGCTGGAAATCGCATGAATGCAGGCACACAGAGAGGTAATGCTCAAGCTTTCAACATGGCTTCTCTAAGAAAGCTCTCTGATGTCAAGAGCACTGATGGAAAAACCACACTGCTTCACTTTGTGGTTGAAGAAGTTGTTCGTTCTGAAGGAAAACGTGCTGTTCTCAACCGCAACCACAGTTTGAGTCGTAGTAGCAGCAGGAACAGTAACAAGAGTGATGACTCTCAAAATTCTTCTGCTTCAAATGAACAAAGACAAAAGGAATATATAACACTAGGATTGCCAGTTGTGGGAGGGATCAGTTCTGAGTTTTCCAACGTGAGGAAAGCTGCGATTACAGATTACAGCACTTTTGTTGGTTCAATCTCAGCACTCTCGGCCAAGATTCTTGAGATTAGAGAACTTGTTTCCCAGTGTGGAAATGACAAGGGAGGGAACTTTGTGAGAGAAATGAACCGTTTTCTTGAAAATGCTGAGGAAGAATTGAGATTAGTGAGGGAAGAGCAAACAAGGGTGATGCAAATTGTGAAAAAAACAACAGATTATTATCAAGGAGGAGCTTCAAAAGATATTGTAGAGCACCCTCTTTATCTATTTGTCATAGTAAAGGATTTTCTGGGAATGGTTGATCAAGCATGCATTGAGATTGCTCGTAACATGCAGAAGAGGAAGACACCTAAGGTAAATTAA 2406 0.4285 MMFLLLVRLVVLQGFLIPTCYCQINTPQNIETFYPIQTSESPLPIQPFQPQASPPSSGPVAATKASSSNSKVGTAVAATAASTLVVSGLVFFFVRRCSRTRKRKETSKNTASAAERHVSPQVEVFERMEGNVKGLIVDEDGLDVLYWRKLEGKKIPQKDFQREVLDSPKDEEGDHEGNPGKITEFIQETPLLREKSSTSHMNIFLPEESYTIMRIPPPAPPPTVPSSVGSSPTHSSSPSFTPSSPKPISTFFSSIPNITNSATPLAPPKVPDKKNEAPIPASAPPPPPPIIDEKKSPQPPPPPPPIPKIMNSAVASPPPPPPPIPPRKSPAPPPPPPKASGLKSSSKPPPNPIERAAGTTSKQGDTSPEVKLKPLHWDKVNTNLDHSMVWDKMDRGSFRVDDDLMEALFGVVATNRNDNAPKENNSTSSSKDALALSSNAFLLDPRKSQNIAIVLKSLTVSRKDIIEALIDGHGLNIETIEKLGRVAPTEEEQSLVLAYEGDPSKLAEAETFLRHILKAVPSAFKRLNALLFRLNYDSEVLEIKEFLQTLEMGCKELRKQGIFVKLLEAVLKAGNRMNAGTQRGNAQAFNMASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRAVLNRNHSLSRSSSRNSNKSDDSQNSSASNEQRQKEYITLGLPVVGGISSEFSNVRKAAITDYSTFVGSISALSAKILEIRELVSQCGNDKGGNFVREMNRFLENAEEELRLVREEQTRVMQIVKKTTDYYQGGASKDIVEHPLYLFVIVKDFLGMVDQACIEIARNMQKRKTPKVN 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2457g00006 801 Gene3D Formin, FH2 domain 382 800 IPR042201 -
Vium2457g00006 801 Coils Coil 720 747 - -
Vium2457g00006 801 PANTHER FORMIN-RELATED 41 792 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium2457g00006 801 PRINTS Proline rich extensin signature 314 339 - -
Vium2457g00006 801 PRINTS Proline rich extensin signature 235 247 - -
Vium2457g00006 801 PRINTS Proline rich extensin signature 292 309 - -
Vium2457g00006 801 PRINTS Proline rich extensin signature 213 229 - -
Vium2457g00006 801 PRINTS Proline rich extensin signature 271 287 - -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 213 374 - -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 629 656 - -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 213 227 - -
Vium2457g00006 801 ProSiteProfiles Formin homology-2 (FH2) domain profile. 362 801 IPR015425 -
Vium2457g00006 801 SUPERFAMILY Formin homology 2 domain (FH2 domain) 318 796 - -
Vium2457g00006 801 Pfam Formin Homology 2 Domain 366 781 IPR015425 -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 271 343 - -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 160 181 - -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 228 264 - -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 44 65 - -
Vium2457g00006 801 SMART it6_source 362 796 IPR015425 -
Vium2457g00006 801 MobiDBLite consensus disorder prediction 628 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2457g00006 Vium-Chr2457 43909 46954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2457g00006 23 797 FH2 protein (formin) Gene Family AT1G70140 44.949 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2457g00006 - - gmx:100780368 1062.75