Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2457g00005 ATGGACACAGACGCCGCAGTCGTTTCCTTTGATCATGTCTCGCCGGAGGATTCTCACGAGGTTCATGTTTTGGCTGTCGACGACAGCCTCGTTGATCGAAAGGTCATTGAACGCTTGCTCAAAATCTCAGCTTGTAAAGTTACAGCTGTGGACAGTGGAATCAGAGCACTGCAATTTCTGGGGTTGGACGAGCAGAGGAGGACCTCTGAATCTGATGGTTTTGTCCCGAGTTTGAAGGTGGATCTAATTATCACAGACTACTGCATGCCCGAGATGACAGGTTATGAATTGCTCAAGAAAATAAAGGAATCGTCCATGTTCAGGGAAATTCCAGTAGTGATTATGTCTTCCGAAAACGTTTTGCCTCGCATAGACAGATGCTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAACCAGTGAAATTATCTGACGTGAAACGGTTGAAGGGTTACATGACAACGAAAGAGGTTAAGGTTGGAAGCCATGACAGAGGAAGCGGTGTTGAGATTAACAACAAAAGAAAGCTGGAAGAAGAGGAAGAGACCTCTGACATGTCATCATCGCCACCGTCCATTTCTACACTTTCATCATCACCGTCCGTTTCTTCACCATCATCTTCTCCTACATCTTCACCCACCGTTCTCGCTTCTCCAATCAGACGGCTTAAAATGAGCACCACGGATTGA 687 0.4614 MDTDAAVVSFDHVSPEDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRRTSESDGFVPSLKVDLIITDYCMPEMTGYELLKKIKESSMFREIPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTKEVKVGSHDRGSGVEINNKRKLEEEEETSDMSSSPPSISTLSSSPSVSSPSSSPTSSPTVLASPIRRLKMSTTD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2457g00005 228 CDD REC_typeA_ARR 23 148 - -
Vium2457g00005 228 MobiDBLite consensus disorder prediction 185 228 - -
Vium2457g00005 228 SUPERFAMILY CheY-like 21 147 IPR011006 -
Vium2457g00005 228 Pfam Response regulator receiver domain 23 145 IPR001789 GO:0000160
Vium2457g00005 228 ProSiteProfiles Response regulatory domain profile. 22 153 IPR001789 GO:0000160
Vium2457g00005 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 197 IPR045279 GO:0009736
Vium2457g00005 228 SMART REC_2 21 152 IPR001789 GO:0000160
Vium2457g00005 228 MobiDBLite consensus disorder prediction 158 228 - -
Vium2457g00005 228 MobiDBLite consensus disorder prediction 158 182 - -
Vium2457g00005 228 Gene3D - 21 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2457g00005 Vium-Chr2457 26153 27635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2457g00005 15 220 Response Regulator Gene Family AT1G59940 60.094 5.18e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium2457g00005 Response_reg 5.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2457g00005 K14492 - gmx:100779833 330.872